Hg_chrom7_TN10mRNA_14575
Organism: Heterodera glycines Gene Locus: chr7:7385670-7393849 Feature type: polypeptideProtein Sequence
Length: 988
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 1.248 | 1.012 | 1.012 | 0.995 | 1.324 | 0.615 | 1.974 | 0.922 | 1.217 | 0.46 | 1.31 | 1.209 | 1.343 | 1.425 | 0.824 | 0.962 | 0.874 | 0.545 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13754
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RHRR
|
— | — | — | — | — | — |
0.375
|
— | — |
0.148
|
0.025
|
0.010
|
0.272
|
0.251
|
0.180
|
0.380
|
0.026
|
0.736
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011578
|
1.000
|
1.000
|
Hsc_gene_8076.t1
|
— | — | — |
KAI1714210.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001507+400-774+|IPR003609+196-292_214-291_231-292_299-392_302-393+|IPR052774+226-822+
|
SM00473+214-291_299-392+
|
PF00024+231-292_302-393+PAN_domain
|
— |
PTHR47327+226-822+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
505-643;778-827;945-988
|
3.000
|
1-504;644-777;828-944
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
109772.270
|
6.688
|
4.500
|
25.506
|
10.324
|
47.672
|
52.328
|
13.968
|
11.538
|
53.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
293.759
|
91.999
|
100.895
|
184.188
|
419.920
|
624.469
|
104.805
|
167.507
|
3.792
|
647.181
|
371.443
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.865
|
0.978
|
1.156
|
0.588
|
-2.566
|
-2.007
|
-0.535
|
-7.566
|
5.862
|
— | — | — |
No JSON data available for plots.