Hg_chrom7_TN10mRNA_14578
Organism: Heterodera glycines Gene Locus: chr7:7402769-7405649 Feature type: polypeptideProtein Sequence
Length: 244
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 0.858 | 1.192 | 0.283 | 0.956 | 1.681 | 1.025 | 0.41 | 1.184 | 1.218 | 0.683 | 1.929 | 2.163 | 0.473 | 1.087 | 0.82 | 0.806 | 1.366 | 0.631 | 1.085 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13757
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-24
|
0.961
|
1.000
|
1.000
|
1.000
|
0.036
|
0.239
|
0.018
|
0.137
|
0.783
|
0.265
|
0.727
|
0.101
|
0.354
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011581
|
1.000
|
1.000
|
Hsc_gene_8074.t1
|
Hsc_gene_8074.t1
|
— |
Q6AXN3.1 Transmembrane emp24 domain-containing protein 5 [Rattus norvegicus]
|
XP_002633453.1 Protein CBG06221 [Caenorhabditis briggsae];CAP26180.1 Protein CBG06221 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.913|GO:0016020_0.842|GO:0071944_0.842|GO:0005886_0.822|GO:0005622_0.780|GO:0005737_0.780|GO:0043226_0.733|GO:0043229_0.721|GO:0043227_0.711|GO:0043231_0.698|GO:0005773_0.692|GO:0012505_0.657|GO:0008150_0.593|GO:0005783_0.519|GO:0009987_0.516|GO:0005794_0.509
|
IPR009038+28-224_29-224_38-120+|IPR015720+8-224+|IPR036598+40-125+
|
SM01190+28-224+
|
PF01105+29-224+emp24/gp25L/p24_family/GOLD
|
— |
PTHR22811+8-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-244
|
1.000
|
1-237
|
5gu5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
27630.560
|
4.816
|
-5.000
|
22.951
|
13.115
|
43.852
|
56.148
|
10.656
|
12.295
|
47.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
953.467
|
783.349
|
860.455
|
1305.443
|
1645.039
|
1718.438
|
1461.011
|
802.313
|
997.590
|
207.206
|
545.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.600
|
0.710
|
0.301
|
— |
-0.224
|
-1.202
|
1.006
|
2.153
|
— |
3.211
|
— | — |