Hg_chrom7_TN10mRNA_14585
Organism: Heterodera glycines Gene Locus: chr7:7431760-7433371 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 1.047 | 1.052 | 0.333 | 0.643 | 0.824 | 0.421 | 2.412 | 1.072 | 1.782 | 0.438 | 0.946 | 0.804 | 0.989 | 1.706 | 1.608 | 1.107 | 0.828 | 1.237 | 0.567 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.697
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
5-25
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.147
|
0.170
|
0.025
|
0.331
|
0.412
|
0.316
|
0.429
|
0.122
|
0.197
|
0.626
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q21920.3 Ankyrin repeat and KH domain-containing protein mask-1 [Caenorhabditis elegans]
|
WP_187455883.1 ankyrin repeat domain-containing protein [Cytophaga sp. FL35];MBC6996945.1 ankyrin repeat domain-containing protein [Cytophaga sp. FL35]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+106-135_106-138_108-135_146-175_146-178_148-175_179-208+|IPR036770+77-261_87-201+
|
SM00248+106-135_146-175_179-208+
|
PF00023+108-135_148-175+Ankyrin_repeat
|
— |
PTHR24171+148-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
7zyu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
34998.780
|
9.401
|
12.500
|
25.723
|
11.254
|
51.447
|
48.553
|
16.077
|
9.646
|
50.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
37.608
|
7.582
|
10.858
|
22.657
|
46.931
|
67.110
|
82.544
|
191.458
|
0.000
|
3.608
|
2.062
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.442
|
1.173
|
1.017
|
0.531
|
— |
1.404
|
-1.069
|
— |
5.359
|
— | — | — |
No JSON data available for plots.