Hg_chrom7_TN10mRNA_14586
Organism: Heterodera glycines Gene Locus: chr7:7433748-7438814 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 0.815 | 0.668 | 0.691 | 0.751 | 1.798 | 0.616 | 2.421 | 0.853 | 1.128 | 0.481 | 1.277 | 2.087 | 1.316 | 1.601 | 1.073 | 0.739 | 0.911 | 0.385 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13765
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
72-94
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.645
|
0.215
|
0.008
|
0.392
|
0.140
|
0.175
|
0.130
|
0.018
|
0.094
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011584
|
1.000
|
1.000
|
Hsc_gene_8064.t1
|
Hsc_gene_8064.t1
|
— | — |
KAI3413963.1 acid phosphatase det1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0009987_0.893|GO:0005575_0.879|GO:0008152_0.829|GO:0044238_0.814|GO:0043170_0.779|GO:0003674_0.643|GO:0065007_0.627|GO:0050789_0.617|GO:0005488_0.556|GO:0110165_0.532|GO:0048518_0.530|GO:0019222_0.525|GO:0060255_0.509|GO:0080090_0.508|GO:0005515_0.507
|
IPR019138+37-297_176-586+
|
— |
PF09737+176-586+De-etiolated_protein_1_Det1
|
— |
PTHR13374+37-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-599
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
67900.440
|
9.634
|
31.500
|
24.040
|
15.192
|
46.578
|
53.422
|
15.860
|
8.180
|
47.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
626.047
|
758.670
|
563.953
|
443.631
|
513.442
|
410.970
|
965.032
|
372.837
|
145.048
|
1119.467
|
701.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.658
|
-0.911
|
-0.237
|
0.180
|
-0.307
|
1.242
|
— |
1.516
|
-3.069
|
— | — | — | — |
No JSON data available for plots.