Hg_chrom7_TN10mRNA_14587
Organism: Heterodera glycines Gene Locus: chr7:7439272-7441190 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.566 | 0.626 | 0.551 | 1.161 | 0.112 | 0.518 | 0.722 | 1.347 | 0.823 | 2.184 | 0.153 | 1.188 | 2.245 | 0.907 | 0.825 | 0.962 | 0.883 | 1.428 | 1.295 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13766
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
75-95
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.148
|
0.288
|
0.004
|
0.255
|
0.793
|
0.525
|
0.644
|
0.004
|
0.444
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011585
|
1.000
|
1.000
|
Hsc_gene_8063.t1
|
Hsc_gene_8063.t1
|
— |
O45876.1 Gamma-secretase subunit aph-1 [Caenorhabditis elegans]
|
KAH7727593.1 Protein APH-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016485|GO:0043085
|
GO:0008150_0.950|GO:0065007_0.800|GO:0009987_0.791|GO:0050789_0.774|GO:0005575_0.690|GO:0071944_0.690|GO:0110165_0.690|GO:0005886_0.678|GO:0016020_0.678|GO:0050896_0.590|GO:0008152_0.571|GO:0032501_0.560|GO:0044238_0.549|GO:0007154_0.548|GO:0023052_0.544|GO:0019538_0.527|GO:0043170_0.527|GO:0006508_0.502
|
IPR009294+1-157_6-152+
|
— |
PF06105+6-152+Aph-1_protein
|
— |
PTHR12889+1-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
32141.070
|
8.178
|
8.000
|
11.448
|
15.488
|
28.283
|
71.717
|
7.744
|
3.704
|
54.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
705.603
|
470.092
|
526.108
|
436.507
|
518.036
|
474.614
|
1200.719
|
445.788
|
45.514
|
1525.927
|
891.464
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.244
|
-0.160
|
0.215
|
— |
1.349
|
— |
1.571
|
-5.219
|
— | — | — | — |
No JSON data available for plots.