SCN Proteipedia

Hg_chrom7_TN10mRNA_14589

Organism: Heterodera glycines Gene Locus: chr7:7441478-7450528 Feature type: polypeptide

Protein Sequence

Length: 1,067

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.894	0.763	0.937	0.776	0.828	0.865	0.602	1.125	1.416	1.558	0.696	1.985	1.38	0.559	1.205	1.031	1.091	1.207	0.865	0.992	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13767	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|endoplasmic_reticulum\|lysosome_vacuole\|golgi_apparatus	—	—	—	—	39-79	1.000	—	—	0.000	—	—	0.078	0.130	0.018	0.158	0.624	0.741	0.776	0.048	0.625	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002438	2.000	2.000	Hsc_gene_8062.t1;Hsc_gene_8062.t2	Hsc_gene_8062.t1;Hsc_gene_8062.t2;Hsc_gene_8062.t3	—	G5EBH1.1 Probable phospholipid-transporting ATPase tat-5 [Caenorhabditis elegans]	KAF7637459.1 Phospholipid-transporting ATPase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0000287\|GO:0005215\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0016887\|GO:0140326	GO:0005575_0.902\|GO:0110165_0.902\|GO:0016020_0.860\|GO:0071944_0.857\|GO:0005886_0.855\|GO:0008150_0.813\|GO:0005622_0.759\|GO:0043226_0.748\|GO:0005737_0.734\|GO:0043227_0.712\|GO:0043229_0.701\|GO:0009987_0.694\|GO:0043231_0.671\|GO:0005773_0.609\|GO:0012505_0.584\|GO:0006810_0.551\|GO:0051179_0.551\|GO:0051234_0.551\|GO:0003674_0.527\|GO:0065007_0.517	IPR001757+342-458_776-884+\|IPR006539+101-1066+\|IPR008250+195-329+\|IPR018303+439-445+\|IPR023214+666-843+\|IPR023298+101-1060+\|IPR023299+443-676_511-665+\|IPR032630+833-1060+\|IPR032631+100-154+\|IPR036412+426-845+\|IPR044492+420-854+	—	PF00122+173-402+E1-E2_ATPase\|PF13246+498-594+Cation_transport_ATPase_(P-type)\|PF16209+100-154+Phospholipid-translocating_ATPase_N-terminal\|PF16212+833-1060+Phospholipid-translocating_P-type_ATPase_C-terminal	G3DSA:3.40.1110.10:FF:000117+516-659+Phospholipid-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000009+667-843+Phospholipid-transporting_ATPase	PTHR24092+85-1065+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7	1.000	8-1067	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.588	120159.680	7.824	16.000	22.868	11.715	43.393	56.607	12.746	10.122	48.172

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	orange	1973.647	3991.144	2526.881	2030.053	2333.225	3283.115	3616.510	2557.172	842.077	376.359	575.953

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.888	-1.112	-0.208	0.169	0.508	0.149	-0.466	0.642	—	—	—	—	—

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