Hg_chrom7_TN10mRNA_14601
Organism: Heterodera glycines Gene Locus: chr7:7490584-7495408 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.174 | 0.913 | 1.121 | 0.258 | 0.997 | 0.911 | 0.801 | 1.682 | 1.121 | 0.631 | 1.161 | 1.539 | 1.038 | 1.402 | 0.801 | 0.935 | 1.042 | 0.765 | 1.582 | 1.319 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.552
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
extracellular|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.106
|
0.127
|
0.075
|
0.163
|
0.518
|
0.475
|
0.748
|
0.015
|
0.198
|
0.661
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004636
|
1.000
|
2.000
|
Hsc_gene_2079.t1;Hsc_gene_8049.t1
|
Hsc_gene_2078.t1;Hsc_gene_8049.t1
|
— |
Q1L8D2.1 Glycoprotein endo-alpha-1,2-mannosidase-like protein [Danio rerio]
|
KAH7727595.1 Glycoprotein endo-alpha-1,2-mannosidase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016798
|
GO:0003674_0.886|GO:0003824_0.747|GO:0016787_0.692|GO:0004553_0.658|GO:0016798_0.658|GO:0004559_0.650|GO:0015923_0.650
|
IPR026071+68-477_141-472_141-516+
|
— |
PF16317+141-472+Glycosyl_hydrolase_family_99
|
— |
PTHR13572+68-477+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-132
|
1.000
|
133-535
|
6zj5_AAA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
59665.120
|
7.126
|
6.000
|
27.103
|
13.645
|
47.477
|
52.523
|
14.953
|
12.150
|
52.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1594.470
|
763.729
|
1535.941
|
1425.645
|
1832.687
|
1875.711
|
1963.025
|
988.231
|
1812.325
|
1722.201
|
1760.826
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
0.763
|
— |
0.330
|
— | — |
-1.030
|
1.133
|
1.308
|
— | — | — | — |
No JSON data available for plots.