Hg_chrom7_TN10mRNA_14604
Organism: Heterodera glycines Gene Locus: chr7:7498054-7502908 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 0.722 | 0.911 | 2.88 | 1.193 | 1.04 | 0.881 | 2.267 | 0.583 | 0.613 | 0.47 | 0.983 | 0.994 | 1.102 | 1.753 | 1.398 | 0.548 | 1.049 | 2.203 | 0.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13779
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.327
|
0.223
|
0.007
|
0.209
|
0.191
|
0.147
|
0.201
|
0.030
|
0.195
|
0.880
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004637
|
3.000
|
0.000
|
0.000
|
— | — |
P90884.5 Protein madd-4 [Caenorhabditis elegans]
|
KAI1722523.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030198
|
GO:0008150_0.780|GO:0005575_0.681|GO:0110165_0.681|GO:0009987_0.671|GO:0032501_0.579|GO:0032502_0.569|GO:0048856_0.569|GO:0003674_0.534|GO:0007275_0.505
|
IPR000884+77-126_80-126_81-125_239-297_296-358_299-358_360-414_363-414+|IPR013273+86-104_193-212_213-232+|IPR036383+61-129_79-125_298-357_298-358_357-409_359-413+|IPR045371+172-232+|IPR050439+77-232+
|
SM00209+80-126_239-297_299-358_360-414+
|
PF00090+81-125+Thrombospondin_type_1_domain|PF19030+300-357_360-408+Thrombospondin_type_1_domain|PF19236+172-232+ADAMTS_cysteine-rich_domain
|
G3DSA:2.20.100.10:FF:000005+298-358+ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9
|
PTHR13723+77-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40
|
1.000
|
41-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
46556.350
|
7.122
|
7.500
|
28.401
|
11.217
|
48.687
|
51.313
|
16.229
|
12.172
|
57.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
120.552
|
127.523
|
267.685
|
102.040
|
28.815
|
20.937
|
65.317
|
62.092
|
43.506
|
241.882
|
156.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
-0.459
|
-1.284
|
-1.854
|
— |
1.650
|
1.463
|
— | — | — | — | — | — |
No JSON data available for plots.