Hg_chrom7_TN10mRNA_14606
Organism: Heterodera glycines Gene Locus: chr7:7515717-7520055 Feature type: polypeptideProtein Sequence
Length: 486
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 1.148 | 0.823 | 0.851 | 0.754 | 1.266 | 0.833 | 1.852 | 0.823 | 1.362 | 0.249 | 1.573 | 1.772 | 1.741 | 1.218 | 1.264 | 0.641 | 0.717 | 0.95 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
1-21
|
0.993
|
16-36
|
0.999
|
— | — |
0.201
|
— | — |
0.185
|
0.071
|
0.050
|
0.180
|
0.403
|
0.395
|
0.349
|
0.016
|
0.574
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011591
|
1.000
|
1.000
|
Hsc_gene_8047.t1
|
Hsc_gene_8047.t1
|
— | — |
KAI1722519.1 modulator of levamisole receptor-1 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
422-486
|
1.000
|
1-421
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
53391.600
|
6.675
|
2.000
|
20.370
|
12.346
|
43.004
|
56.996
|
11.317
|
9.053
|
54.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
852.240
|
1476.492
|
343.009
|
373.873
|
122.778
|
79.538
|
67.557
|
291.793
|
23.764
|
2677.589
|
1540.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.335
|
-2.119
|
0.233
|
-1.639
|
-0.611
|
— |
1.771
|
-1.970
|
-4.833
|
— |
-3.844
|
— | — |
No JSON data available for plots.