SCN Proteipedia

Hg_chrom7_TN10mRNA_14608

Organism: Heterodera glycines Gene Locus: chr7:7529476-7536500 Feature type: polypeptide

Protein Sequence

Length: 950

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.906	1.175	1.34	0.871	0.807	1.134	0.551	1.579	1.123	1.494	0.447	1.424	1.14	0.87	1.203	1.023	1.208	0.957	0.486	0.805	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13783	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	47-85	0.834	—	—	—	—	0.000	—	—	0.484	0.184	0.023	0.500	0.131	0.290	0.200	0.177	0.164	0.155

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011593	1.000	1.000	Hsc_gene_8044.t1	Hsc_gene_2080.t1;Hsc_gene_2093.t1;Hsc_gene_2094.t2;Hsc_gene_2351.t1;Hsc_gene_8044.t1	—	Q6TEP1.2 Protein FAM91A1 [Danio rerio]	KAI1712746.1 protein FAM91A1 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.968\|GO:0009987_0.910\|GO:0005575_0.887\|GO:0110165_0.886\|GO:0016020_0.780\|GO:0051179_0.778\|GO:0071944_0.777\|GO:0005622_0.770\|GO:0005886_0.764\|GO:0016043_0.764\|GO:0071840_0.764\|GO:0051234_0.762\|GO:0006810_0.760\|GO:0051641_0.713\|GO:0043226_0.697\|GO:0033036_0.696\|GO:0008104_0.695\|GO:0070727_0.695\|GO:0005737_0.694\|GO:0051649_0.692\|GO:0071705_0.692\|GO:0016192_0.690\|GO:0045184_0.686\|GO:0015031_0.683\|GO:0046907_0.682\|GO:0043229_0.679\|GO:0006886_0.677\|GO:0051640_0.676\|GO:0051648_0.675\|GO:0051656_0.675\|GO:0051650_0.674\|GO:0006903_0.670\|GO:0099022_0.670\|GO:0099041_0.670\|GO:0043227_0.664\|GO:0043231_0.651\|GO:0005773_0.616\|GO:0012505_0.599\|GO:0031982_0.593\|GO:0097708_0.570\|GO:0031410_0.569\|GO:0005794_0.562\|GO:0031984_0.552\|GO:0098791_0.548\|GO:0005802_0.547	IPR028091+10-314+\|IPR028097+407-653_721-871+\|IPR039199+3-866+	—	PF14647+10-314+FAM91_N-terminus\|PF14648+407-653_721-871+FAM91_C-terminus	—	PTHR28441+3-866+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	359-406;638-726	3.000	1-358;407-637;727-950	8jj9_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.571	106120.270	5.408	-17.000	24.211	10.632	48.211	51.789	12.000	12.211	52.737

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	925.514	728.963	636.387	557.912	688.376	703.375	1571.170	532.891	676.506	1509.592	1152.555

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.426	-0.523	—	0.272	—	1.169	-0.505	1.702	—	—	—	—	—

No JSON data available for plots.

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