Hg_chrom7_TN10mRNA_14611
Organism: Heterodera glycines Gene Locus: chr7:7543901-7546835 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 0.567 | 1.014 | 0.481 | 1.336 | 1.251 | 0.664 | 1.742 | 1.394 | 1.365 | 0.739 | 0.82 | 0.871 | 1.005 | 1.493 | 0.747 | 0.743 | 1.32 | 1.608 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.301
|
0.515
|
0.146
|
0.501
|
0.244
|
0.218
|
0.320
|
0.189
|
0.546
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011594
|
1.000
|
1.000
|
Hsc_gene_8042.t1
|
Hsc_gene_8042.t1
|
— |
Q9Y5P4.1 Ceramide transfer protein [Homo sapiens]
|
KAF7637395.1 START domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.919|GO:0005575_0.890|GO:0110165_0.883|GO:0003674_0.862|GO:0009987_0.856|GO:0005622_0.824|GO:0016020_0.795|GO:0005737_0.788|GO:0043226_0.769|GO:0043229_0.740|GO:0071840_0.730|GO:0043227_0.723|GO:0016043_0.720|GO:0051179_0.713|GO:0051234_0.712|GO:0006810_0.710|GO:0043231_0.698|GO:0051641_0.695|GO:0033036_0.685|GO:0071705_0.685|GO:0051649_0.684|GO:0046907_0.679|GO:0010876_0.674|GO:0006869_0.670|GO:0032365_0.670|GO:0035621_0.670|GO:0035627_0.670|GO:0042886_0.670|GO:0005488_0.555|GO:0071944_0.529
|
IPR002913+48-279_49-271_65-279+|IPR023393+38-284+|IPR051213+41-282+
|
SM00234+48-279+
|
PF01852+49-271+START_domain
|
— |
PTHR19308+41-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
32484.250
|
6.659
|
1.000
|
29.268
|
10.453
|
46.341
|
53.659
|
15.679
|
13.589
|
46.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey60
|
1952.127
|
610.445
|
884.805
|
815.313
|
983.419
|
1094.090
|
1723.820
|
1233.649
|
529.535
|
5388.826
|
3306.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.306
|
0.280
|
— |
0.238
|
0.169
|
0.667
|
— |
0.627
|
-3.436
|
— | — | — | — |
No JSON data available for plots.