Hg_chrom7_TN10mRNA_14613
Organism: Heterodera glycines Gene Locus: chr7:7552362-7553922 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 0.285 | 1.115 | 1.058 | 0.409 | 1.73 | 0.438 | 1.227 | 1.363 | 1.409 | 1.115 | 2.165 | 1.193 | 0.944 | 1.252 | 0.964 | 0.603 | 0.93 | 1.416 | 1.985 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.795
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
46-67
|
0.995
|
40-68
|
0.992
|
— | — |
0.046
|
— | — |
0.415
|
0.337
|
0.017
|
0.642
|
0.077
|
0.060
|
0.085
|
0.015
|
0.037
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004638
|
2.000
|
1.000
|
Hsc_gene_8002.t1
|
— | — |
Q20585.1 26S proteasome non-ATPase regulatory subunit 6 [Caenorhabditis elegans]
|
KHN81633.1 26S proteasome non-ATPase regulatory subunit 6 [Toxocara canis]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.904|GO:0110165_0.904|GO:0005622_0.855|GO:0016020_0.677|GO:0043226_0.664|GO:0043229_0.660|GO:0032991_0.652|GO:0043227_0.628|GO:0043231_0.618|GO:1902494_0.564|GO:0008150_0.562|GO:0140535_0.555|GO:0005737_0.553|GO:1905368_0.547|GO:1905369_0.546|GO:0000502_0.545
|
IPR019585+64-153+|IPR036390+68-144+
|
— | — | — |
PTHR14145+64-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
19099.350
|
9.448
|
10.000
|
24.540
|
15.337
|
42.945
|
57.055
|
15.951
|
8.589
|
41.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
109.425
|
39.886
|
32.015
|
33.879
|
62.863
|
52.323
|
85.264
|
36.853
|
0.000
|
350.079
|
200.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.548
|
— | — |
0.861
|
— |
0.718
|
-0.618
|
1.358
|
-9.250
|
5.939
|
— | — | — |
No JSON data available for plots.