Hg_chrom7_TN10mRNA_14616
Organism: Heterodera glycines Gene Locus: chr7:7558513-7561369 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 0.897 | 0.701 | 0.512 | 1.039 | 1.217 | 0.53 | 0.89 | 0.725 | 1.283 | 0.764 | 1.396 | 1.319 | 1.084 | 1.756 | 0.805 | 2.238 | 0.719 | 0.913 | 0.611 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13791
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRPAVENKGKLKRV,KRVSSLDALKFFERIKGR
|
— | — |
57-102
|
0.989
|
— | — |
0.000
|
— | — |
0.880
|
0.070
|
0.019
|
0.269
|
0.178
|
0.015
|
0.022
|
0.049
|
0.130
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000168
|
9.000
|
3.000
|
Hsc_gene_22084.t1;Hsc_gene_7759.t1;Hsc_gene_7759.t2
|
Hsc_gene_11836.t1;Hsc_gene_14074.t1;Hsc_gene_22084.t1;Hsc_gene_22084.t2;Hsc_gene_7759.t1;Hsc_gene_7759.t2;Hsc_gene_8106.t1
|
— | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+4-97+
|
— |
PF10551+4-97+MULE_transposase_domain
|
— |
PTHR47160+4-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
160-302
|
2.000
|
1-159;303-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
38261.610
|
10.068
|
15.000
|
25.519
|
9.792
|
53.412
|
46.588
|
15.430
|
10.089
|
50.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
117.890
|
10.239
|
2.105
|
4.133
|
5.798
|
17.067
|
1.619
|
5.266
|
2.056
|
496.892
|
284.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.517
|
-1.446
|
— | — |
1.568
|
-3.391
|
-1.803
|
-1.563
|
-7.932
|
— |
-5.967
|
— | — |
No JSON data available for plots.