Hg_chrom7_TN10mRNA_14618
Organism: Heterodera glycines Gene Locus: chr7:7585843-7597438 Feature type: polypeptideProtein Sequence
Length: 1,175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.326 | 1.227 | 0.727 | 0.47 | 1.163 | 1.091 | 0.952 | 0.723 | 0.662 | 0.978 | 0.671 | 1.302 | 0.567 | 0.982 | 1.511 | 1.605 | 1.284 | 0.825 | 0.524 | 0.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13793
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKTVKKKVVRKVVRK,RRITIAAGKKTVKKKVVRK,KREEAAKNNAKREEAAGNNAKKEEAAK
|
5-25
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.488
|
0.157
|
0.015
|
0.647
|
0.093
|
0.137
|
0.170
|
0.034
|
0.258
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011595
|
1.000
|
1.000
|
Hsc_gene_8038.t1
|
Hsc_gene_8037.t1
|
— | — |
KAI3413973.1 hypothetical protein GPALN_011443 [Globodera pallida]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61;262-917
|
2.000
|
62-261;918-1175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
124903.010
|
8.573
|
18.500
|
24.255
|
4.851
|
52.851
|
47.149
|
13.277
|
10.979
|
59.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
4197.509
|
7834.326
|
2255.468
|
1501.402
|
928.148
|
2283.005
|
247.643
|
1958.790
|
380.769
|
11700.232
|
6849.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.026
|
-2.521
|
-0.478
|
-0.725
|
1.313
|
-3.194
|
-0.328
|
-2.839
|
-5.045
|
— |
-3.145
|
— | — |
No JSON data available for plots.