SCN Proteipedia

Hg_chrom7_TN10mRNA_14620

Organism: Heterodera glycines Gene Locus: chr7:7610567-7618738 Feature type: polypeptide

Protein Sequence

Length: 677

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.357	0.653	0.725	0.917	0.935	2.197	0.545	1.551	0.656	1.238	0.38	1.564	0.615	0.795	1.929	1.477	1.017	0.918	0.341	0.261	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13795	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.711

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRR	—	—	34-64	0.933	—	—	0.000	—	—	0.875	0.137	0.008	0.364	0.041	0.052	0.036	0.035	0.069	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011596	1.000	1.000	Hsc_gene_8035.t1	Hsc_gene_8035.t1	—	P50239.1 Ecdysone-inducible protein E75 [Galleria mellonella]	KAI3413975.1 Ecdysone-induced protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.972\|GO:0065007_0.909\|GO:0050789_0.905\|GO:0009987_0.901\|GO:0050794_0.901\|GO:0003674_0.859\|GO:0005488_0.859\|GO:0005575_0.857\|GO:0110165_0.857\|GO:0097159_0.787\|GO:0032501_0.776\|GO:0008152_0.771\|GO:0019222_0.771\|GO:0031323_0.771\|GO:0044237_0.771\|GO:0005622_0.768\|GO:0003676_0.765\|GO:0043170_0.764\|GO:0060255_0.764\|GO:0044238_0.758\|GO:0080090_0.758\|GO:0009058_0.743\|GO:0009889_0.743\|GO:0009059_0.741\|GO:0010556_0.741\|GO:0031326_0.741\|GO:0044249_0.741\|GO:0003677_0.736\|GO:0010467_0.733\|GO:0010468_0.731\|GO:0016020_0.730\|GO:0032502_0.721\|GO:0048856_0.702\|GO:0043226_0.697\|GO:0043229_0.680\|GO:0050896_0.674\|GO:0006139_0.668\|GO:0034654_0.668\|GO:0090304_0.668\|GO:0141187_0.668\|GO:0016070_0.662\|GO:0019219_0.662\|GO:0032774_0.662\|GO:0051252_0.662\|GO:0043565_0.657\|GO:0003690_0.654\|GO:1990837_0.654\|GO:0006351_0.652\|GO:0006355_0.652\|GO:2001141_0.652\|GO:0007275_0.630\|GO:0048518_0.612\|GO:0043227_0.611\|GO:0005634_0.602\|GO:0043231_0.602\|GO:0048519_0.571\|GO:0000976_0.568\|GO:0001067_0.568\|GO:0048523_0.550\|GO:0048522_0.538\|GO:0051716_0.514\|GO:0009893_0.504	IPR001628+29-101_29-105_31-100_32-48_32-58_48-63_82-90_90-98+\|IPR013088+22-133+\|IPR035500+83-232_138-415_187-408+\|IPR050234+19-399+	SM00399+29-101+	PF00105+31-100+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+24-131+Nuclear_Hormone_Receptor_family	PTHR24082+19-399+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-16;418-677	1.000	17-417	1hlz_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.815	74438.080	9.076	26.500	24.668	6.647	52.585	47.415	15.066	9.601	52.437

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	magenta	343.705	339.270	338.402	464.320	555.664	766.342	195.255	587.887	40.384	255.743	163.446

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.231	0.316	0.564	0.226	0.480	-1.965	-0.495	-1.447	—	—	—	—	—

No JSON data available for plots.

Back to Browser