Hg_chrom7_TN10mRNA_14627
Organism: Heterodera glycines Gene Locus: chr7:7642132-7644969 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.452 | 1.731 | 0.941 | 0.335 | 0.917 | 1.328 | 0.347 | 1.133 | 2.157 | 1.443 | 0.981 | 1.904 | 2.157 | 0.498 | 0.925 | 1.156 | 0.371 | 1.079 | 0.996 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13802
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.555
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.500
|
0.487
|
0.007
|
0.729
|
0.187
|
0.161
|
0.159
|
0.037
|
0.122
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000028
|
21.000
|
10.000
|
Hsc_gene_3827.t1;Hsc_gene_3832.t1;Hsc_gene_8012.t1;Hsc_gene_8018.t1;Hsc_gene_8019.t1;Hsc_gene_8021.t1;Hsc_gene_8022.t1;Hsc_gene_8023.t1;Hsc_gene_8029.t1;Hsc_gene_8034.t1
|
— | — | — |
KAI3418348.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+129-213+|IPR011333+105-252_123-213+
|
— |
PF00651+129-213+BTB/POZ_domain
|
— |
PTHR22744+107-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
36143.980
|
7.846
|
4.500
|
23.948
|
14.239
|
46.926
|
53.074
|
13.269
|
10.680
|
40.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
45.348
|
56.475
|
59.688
|
14.315
|
9.083
|
5.406
|
30.075
|
32.149
|
0.000
|
120.701
|
68.972
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.116
|
-1.948
|
— | — |
2.483
|
2.471
|
— | — |
4.697
|
— | — | — |
No JSON data available for plots.