Hg_chrom7_TN10mRNA_14635
Organism: Heterodera glycines Gene Locus: chr7:7676620-7679511 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.638 | 1.489 | 1.053 | 0.841 | 1.016 | 0.86 | 0.472 | 0.762 | 1.829 | 1.73 | 0.785 | 1.614 | 1.694 | 0.762 | 0.933 | 1.22 | 0.65 | 0.97 | 0.704 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13808
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.631
|
0.358
|
0.016
|
0.700
|
0.184
|
0.078
|
0.077
|
0.047
|
0.132
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000028
|
21.000
|
10.000
|
Hsc_gene_3827.t1;Hsc_gene_3832.t1;Hsc_gene_8012.t1;Hsc_gene_8018.t1;Hsc_gene_8019.t1;Hsc_gene_8021.t1;Hsc_gene_8022.t1;Hsc_gene_8023.t1;Hsc_gene_8029.t1;Hsc_gene_8034.t1
|
Hsc_gene_3834.t1
|
— | — |
KAI3418348.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+127-230_129-228+|IPR011333+120-253_129-228+
|
SM00225+127-230+
|
PF00651+129-228+BTB/POZ_domain
|
— |
PTHR22744+120-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
37049.950
|
5.228
|
-4.500
|
23.171
|
10.061
|
45.427
|
54.573
|
11.280
|
11.890
|
46.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
12.848
|
47.071
|
12.223
|
7.352
|
4.011
|
4.254
|
18.581
|
5.815
|
4.621
|
15.507
|
10.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.183
|
-2.818
|
— | — | — |
2.141
|
— |
1.822
|
— | — | — | — | — |
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