Hg_chrom7_TN10mRNA_14638
Organism: Heterodera glycines Gene Locus: chr7:7688113-7689567 Feature type: polypeptideProtein Sequence
Length: 215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.514 | 1.099 | 0.962 | 1.085 | 0.835 | 0.332 | 0.93 | 1.344 | 1.823 | 0.916 | 2.462 | 2.196 | 0.805 | 0.854 | 0.93 | 0.381 | 1.128 | 0.358 | 0.547 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13811
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
61-81
|
0.956
|
— | — |
0.000
|
— | — |
0.549
|
0.416
|
0.012
|
0.722
|
0.214
|
0.078
|
0.143
|
0.032
|
0.133
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000028
|
21.000
|
10.000
|
Hsc_gene_3827.t1;Hsc_gene_3832.t1;Hsc_gene_8012.t1;Hsc_gene_8018.t1;Hsc_gene_8019.t1;Hsc_gene_8021.t1;Hsc_gene_8022.t1;Hsc_gene_8023.t1;Hsc_gene_8029.t1;Hsc_gene_8034.t1
|
Hsc_gene_2103.t1
|
— | — |
KAI3418348.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.943|GO:0003674_0.823|GO:0050896_0.798|GO:0005488_0.749|GO:0005515_0.741|GO:0009628_0.699|GO:0009314_0.679|GO:0009416_0.679|GO:0042802_0.671|GO:0009639_0.670|GO:0010114_0.670|GO:0042803_0.657|GO:0046983_0.657|GO:0046982_0.650|GO:0005575_0.634|GO:0110165_0.629|GO:0005622_0.587|GO:0016020_0.574|GO:0043226_0.538|GO:0043229_0.508|GO:0043227_0.504
|
IPR000210+52-153_55-151+|IPR011333+47-191_54-151+
|
SM00225+52-153+
|
PF00651+55-151+BTB/POZ_domain
|
— |
PTHR22744+51-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
24709.900
|
5.329
|
-3.000
|
24.651
|
12.093
|
43.256
|
56.744
|
12.093
|
12.558
|
44.186
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
10.405
|
18.460
|
12.544
|
9.618
|
7.896
|
9.971
|
15.011
|
15.527
|
0.000
|
12.136
|
6.935
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.781
|
-1.077
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.