Hg_chrom7_TN10mRNA_14645
Organism: Heterodera glycines Gene Locus: chr7:7729186-7731569 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.848 | 1.231 | 0.629 | 1.302 | 1.335 | 0.434 | 0.651 | 1.157 | 1.584 | 1.381 | 1.838 | 1.736 | 0.501 | 1.116 | 0.484 | 0.64 | 0.829 | 0.2 | 1.532 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13818
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.498
|
0.205
|
0.019
|
0.593
|
0.130
|
0.182
|
0.148
|
0.002
|
0.060
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004638
|
2.000
|
1.000
|
Hsc_gene_8002.t1
|
Hsc_gene_8002.t1
|
— |
Q20585.1 26S proteasome non-ATPase regulatory subunit 6 [Caenorhabditis elegans]
|
KHN81633.1 26S proteasome non-ATPase regulatory subunit 6 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.895|GO:0110165_0.892|GO:0005622_0.837|GO:0016020_0.720|GO:0043226_0.686|GO:0043229_0.673|GO:0032991_0.654|GO:0043227_0.639|GO:0043231_0.627|GO:0005737_0.604|GO:0008150_0.595|GO:1902494_0.514|GO:0005634_0.505
|
IPR000717+180-356_272-352_285-368+|IPR019585+2-384+|IPR036390+279-359+|IPR045135+53-226+|IPR049549+360-382+
|
SM00088+285-368+
|
PF01399+272-352+PCI_domain|PF10602+53-226+26S_proteasome_subunit_RPN7|PF21154+360-382+26S_proteasome_regulatory_subunit_RPN7/PSMD6_C-terminal_helix
|
G3DSA:1.25.40.570:FF:000005+4-335+26S_proteasome_regulatory_subunit_N7
|
PTHR14145+2-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-384
|
6wjn_Y
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
44832.920
|
7.256
|
2.500
|
30.469
|
13.021
|
46.615
|
53.385
|
15.885
|
14.583
|
39.323
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
2388.586
|
920.133
|
1884.005
|
3353.021
|
3857.169
|
3376.353
|
3172.389
|
2476.124
|
1548.427
|
2149.045
|
1891.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
1.728
|
0.940
|
0.170
|
-0.177
|
— |
-0.553
|
0.500
|
— | — | — | — | — |
No JSON data available for plots.