Hg_chrom7_TN10mRNA_14646
Organism: Heterodera glycines Gene Locus: chr7:7731996-7732887 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.67 | 0.703 | 0.191 | 0.645 | 0.708 | 1.579 | 0.829 | 0.737 | 1.195 | 0.586 | 1.625 | 0.767 | 0.744 | 1.691 | 1.184 | 0.996 | 1.172 | 0.0 | 0.975 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13819
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
41-95
|
0.953
|
— | — | — | — |
0.000
|
— | — |
0.158
|
0.923
|
0.130
|
0.079
|
0.010
|
0.018
|
0.014
|
0.006
|
0.064
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011599
|
1.000
|
1.000
|
Hsc_gene_8001.t1
|
Hsc_gene_25940.t1;Hsc_gene_8001.t1
|
— |
P40947.3 Single-stranded DNA-binding protein [Pseudomonas aeruginosa PAO1]
|
KAH7722637.1 MTSS-1 protein [Aphelenchus avenae]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003697|GO:0006260
|
GO:0008150_0.908|GO:0005575_0.886|GO:0110165_0.874|GO:0009987_0.829|GO:0005622_0.793|GO:0005737_0.750|GO:0003674_0.652|GO:0008152_0.587|GO:0005488_0.586|GO:0065007_0.581|GO:0044238_0.562|GO:0016020_0.560|GO:0043170_0.547|GO:0043226_0.533|GO:0005515_0.530|GO:0003824_0.527|GO:0043229_0.523|GO:0006139_0.520|GO:0097159_0.516|GO:0043227_0.505|GO:0090304_0.504|GO:0003676_0.501
|
IPR000424+49-132_49-155_52-128+|IPR011344+28-148+|IPR012340+45-161_47-167+
|
— |
PF00436+49-132+Single-strand_binding_protein_family
|
— |
PTHR10302+28-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-181
|
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
19316.800
|
10.386
|
9.500
|
21.547
|
7.735
|
45.856
|
54.144
|
13.812
|
7.735
|
58.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2052.633
|
1263.078
|
1179.438
|
3694.744
|
3606.715
|
1966.337
|
1723.443
|
816.409
|
1447.714
|
2550.675
|
2077.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.329
|
1.412
|
1.756
|
— |
-0.860
|
-0.180
|
-1.372
|
1.220
|
— | — | — | — | — |
No JSON data available for plots.