Hg_chrom7_TN10mRNA_14647
Organism: Heterodera glycines Gene Locus: chr7:7733116-7735313 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 0.741 | 0.926 | 0.11 | 0.69 | 1.388 | 0.948 | 1.433 | 0.991 | 1.076 | 0.627 | 1.686 | 0.885 | 0.919 | 1.495 | 1.456 | 0.835 | 0.869 | 2.45 | 1.311 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRRR
|
1-22
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.112
|
0.942
|
0.070
|
0.148
|
0.023
|
0.060
|
0.139
|
0.043
|
0.060
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011600
|
1.000
|
1.000
|
Hsc_gene_8000.t1
|
Hsc_gene_8000.t1
|
— |
P34492.4 Putative NipSnap protein K02D10.1 [Caenorhabditis elegans]
|
KAI1708853.1 NIPSNAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.903|GO:0009987_0.839|GO:0005575_0.778|GO:0008152_0.772|GO:0110165_0.772|GO:0044237_0.748|GO:0005622_0.688|GO:0016020_0.686|GO:0009056_0.664|GO:0043226_0.650|GO:0044248_0.646|GO:0006914_0.636|GO:0061919_0.636|GO:0005737_0.634|GO:0000422_0.632|GO:0000423_0.632|GO:0016236_0.632|GO:0043229_0.628|GO:0043227_0.622|GO:0043231_0.608|GO:0003674_0.581
|
IPR011008+102-203_210-311+|IPR012577+215-311+|IPR051557+59-314+
|
— |
PF07978+215-311+NIPSNAP
|
G3DSA:3.30.70.100:FF:000003+210-314+Protein_NipSnap_homolog_2
|
PTHR21017+59-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
35443.000
|
9.710
|
11.500
|
23.567
|
13.694
|
47.452
|
52.548
|
14.331
|
9.236
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
732.397
|
451.739
|
937.704
|
822.146
|
1036.472
|
1107.442
|
1166.771
|
1282.217
|
135.799
|
550.704
|
372.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
0.727
|
— |
0.303
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.