Hg_chrom7_TN10mRNA_14648
Organism: Heterodera glycines Gene Locus: chr7:7736052-7738368 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 1.224 | 1.23 | 0.0 | 1.19 | 2.892 | 0.895 | 1.504 | 1.003 | 1.321 | 0.57 | 1.106 | 0.627 | 0.506 | 1.611 | 1.182 | 0.863 | 0.399 | 0.578 | 0.221 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13821
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.158
|
0.334
|
0.016
|
0.508
|
0.306
|
0.620
|
0.569
|
0.028
|
0.367
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011601
|
1.000
|
1.000
|
Hsc_gene_7999.t1
|
Hsc_gene_7999.t1
|
— |
P83351.1 Soluble NSF attachment protein 29 [Caenorhabditis elegans]
|
KAI1722682.1 soluble NSF attachment protein 29 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.898|GO:0110165_0.888|GO:0008150_0.852|GO:0016020_0.821|GO:0009987_0.811|GO:0005622_0.801|GO:0043226_0.681|GO:0005737_0.674|GO:0043229_0.673|GO:0043227_0.629|GO:0071944_0.626|GO:0005886_0.619|GO:0043231_0.612|GO:0051179_0.590|GO:0051234_0.575|GO:0006810_0.566|GO:0071840_0.542|GO:0016043_0.533|GO:0051641_0.533
|
IPR000727+44-111_49-111_197-264_202-264+
|
SM00397+44-111_197-264+
|
— |
G3DSA:1.20.5.110:FF:000041+38-115+Synaptosomal-associated_protein_29
|
PTHR19305+26-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-266
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
29661.630
|
6.097
|
-2.000
|
28.571
|
6.767
|
58.647
|
41.353
|
14.662
|
13.910
|
46.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2101.658
|
1595.002
|
1290.988
|
1786.346
|
2391.075
|
3506.427
|
2683.453
|
2982.799
|
964.711
|
2382.685
|
1774.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.534
|
— |
0.577
|
0.388
|
0.567
|
-0.375
|
-0.340
|
— | — | — | — | — | — |
No JSON data available for plots.