Hg_chrom7_TN10mRNA_14655
Organism: Heterodera glycines Gene Locus: chr7:7767133-7775300 Feature type: polypeptideProtein Sequence
Length: 761
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.421 | 0.856 | 1.577 | 0.181 | 1.139 | 1.112 | 0.829 | 2.037 | 1.11 | 1.314 | 0.557 | 1.391 | 0.694 | 0.606 | 1.877 | 0.788 | 0.711 | 0.677 | 0.505 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13828
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
47-67
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.177
|
0.130
|
0.090
|
0.696
|
0.137
|
0.471
|
0.326
|
0.024
|
0.543
|
0.162
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011605
|
1.000
|
1.000
|
Hsc_gene_7994.t1
|
Hsc_gene_7994.t1
|
— | — |
KAI1708826.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+163-234_190-220_224-276_365-456_392-413_392-422_426-459_655-685_656-687+|IPR036770+140-295_162-728_356-481_621-737+
|
SM00248+190-220_224-276_392-422_426-459_655-685+
|
PF00023+656-687+Ankyrin_repeat|PF12796+163-234_365-456+Ankyrin_repeats_(3_copies)
|
— |
PTHR24172+83-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88;447-523;719-761
|
2.000
|
89-446;524-718
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
84639.720
|
6.273
|
-4.500
|
32.457
|
9.330
|
50.329
|
49.671
|
16.951
|
15.506
|
49.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1033.236
|
203.931
|
386.067
|
113.462
|
43.943
|
42.658
|
54.376
|
212.835
|
131.088
|
4025.614
|
2356.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
-0.983
|
-1.656
|
-1.402
|
— | — |
2.218
|
-1.827
|
-5.030
|
— |
-6.080
|
— | — |
No JSON data available for plots.