Hg_chrom7_TN10mRNA_14658
Organism: Heterodera glycines Gene Locus: chr7:7779838-7781725 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.851 | 0.443 | 1.682 | 0.813 | 1.407 | 0.726 | 1.22 | 0.678 | 1.566 | 1.201 | 0.717 | 1.016 | 0.821 | 1.742 | 1.132 | 1.1 | 0.739 | 0.0 | 1.076 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13831
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
15-40
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.411
|
0.163
|
0.015
|
0.579
|
0.197
|
0.039
|
0.203
|
0.040
|
0.096
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001381
|
3.000
|
2.000
|
Hsc_gene_1799.t1;Hsc_gene_26303.t1
|
Hsc_gene_1799.t1;Hsc_gene_26303.t1;Hsc_gene_7980.t1
|
— |
P58375.1 Large ribosomal subunit protein eL30 [Spodoptera frugiperda]
|
KAI1716349.1 ribosomal protein l7Ae/L30e/S12e/Gadd45 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0005575_0.923|GO:0110165_0.923|GO:0005622_0.751|GO:0005737_0.647|GO:0003674_0.617|GO:0043226_0.595|GO:0043229_0.574|GO:0005488_0.556|GO:0008150_0.548
|
IPR004038+3-76+|IPR022991+5-29+|IPR029064+1-79_2-75+|IPR039109+2-81+
|
— |
PF01248+3-76+Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family
|
G3DSA:3.30.1330.30:FF:000001+1-85+60S_ribosomal_protein_L30
|
PTHR11449+2-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
9cai_Cc
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
18485.420
|
10.215
|
17.000
|
26.220
|
9.756
|
50.000
|
50.000
|
18.902
|
7.317
|
47.561
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
142.938
|
66.864
|
55.062
|
84.291
|
80.370
|
70.350
|
113.348
|
66.512
|
67.122
|
373.713
|
242.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.513
|
— |
0.726
|
— | — |
0.700
|
— |
0.913
|
— | — | — | — | — |
No JSON data available for plots.