Hg_chrom7_TN10mRNA_14659
Organism: Heterodera glycines Gene Locus: chr7:7788682-7795479 Feature type: polypeptideProtein Sequence
Length: 1,093
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.021 | 0.981 | 0.915 | 0.869 | 1.196 | 0.882 | 1.144 | 1.078 | 1.039 | 0.554 | 1.238 | 0.813 | 1.038 | 1.587 | 1.438 | 1.17 | 0.873 | 0.915 | 0.565 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13832
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RPRR
|
— | — |
13-41
|
0.984
|
— | — |
0.000
|
— | — |
0.309
|
0.246
|
0.038
|
0.298
|
0.627
|
0.113
|
0.217
|
0.072
|
0.275
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004640
|
1.000
|
2.000
|
Hsc_gene_25943.t1;Hsc_gene_7993.t1
|
— | — |
Q6ZPJ0.2 Testis-expressed protein 2 [Mus musculus]
|
KAI1722751.1 testis-expressed protein 2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.931|GO:0110165_0.924|GO:0016020_0.860|GO:0005622_0.810|GO:0071944_0.800|GO:0005886_0.771|GO:0043226_0.767|GO:0043229_0.759|GO:0043227_0.727|GO:0043231_0.723|GO:0005737_0.716|GO:0008150_0.647|GO:0005773_0.627|GO:0012505_0.615|GO:0009987_0.604|GO:0005783_0.560|GO:0003674_0.557
|
— | — | — | — |
PTHR13466+193-1081+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
388-554;661-720;839-957
|
4.000
|
1-387;555-660;721-838;958-1093
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
119969.020
|
8.117
|
21.500
|
24.337
|
8.326
|
50.595
|
49.405
|
13.724
|
10.613
|
55.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1405.936
|
1754.279
|
1027.073
|
883.655
|
1040.085
|
1038.977
|
2282.434
|
785.250
|
1071.978
|
2042.578
|
1626.607
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.001
|
-1.127
|
— |
0.203
|
— |
1.146
|
-0.509
|
1.682
|
— | — | — | — | — |
No JSON data available for plots.