Hg_chrom7_TN10mRNA_14661
Organism: Heterodera glycines Gene Locus: chr7:7804041-7809618 Feature type: polypeptideProtein Sequence
Length: 916
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.371 | 0.939 | 0.615 | 1.054 | 0.673 | 2.547 | 0.533 | 1.747 | 0.631 | 0.797 | 0.811 | 1.927 | 0.637 | 1.638 | 0.691 | 1.138 | 1.45 | 0.91 | 0.084 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13834
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.569
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
AKRRRK
|
— | — |
35-58
|
0.950
|
— | — |
0.000
|
— | — |
0.930
|
0.087
|
0.008
|
0.233
|
0.024
|
0.017
|
0.018
|
0.013
|
0.074
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011606
|
1.000
|
1.000
|
Hsc_gene_7991.t1
|
Hsc_gene_25937.t1
|
— | — |
KAI1708817.1 zinc finger, C2H2 type [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0071985
|
— |
IPR013087+622-645_651-674_651-679_653-674_763-786_789-812_791-812+|IPR045251+295-879+
|
SM00355+622-645_651-674_763-786_789-812+
|
— | — |
PTHR23030+295-879+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
69-608;844-916
|
2.000
|
1-68;609-843
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
98456.330
|
8.326
|
28.000
|
19.651
|
7.205
|
50.437
|
49.563
|
12.227
|
7.424
|
58.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
586.913
|
803.183
|
885.451
|
549.748
|
359.646
|
572.094
|
433.587
|
786.981
|
1008.052
|
165.197
|
526.421
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.684
|
-0.579
|
-0.645
|
0.684
|
-0.390
|
— |
-0.720
|
— | — | — | — | — |
No JSON data available for plots.