SCN Proteipedia

Hg_chrom7_TN10mRNA_14667

Organism: Heterodera glycines Gene Locus: chr7:7853633-7863422 Feature type: polypeptide

Protein Sequence

Length: 939

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.399	1.362	0.716	0.771	0.763	2.212	0.685	2.13	0.592	1.094	0.403	1.19	0.473	1.434	1.065	1.263	1.152	0.791	0.819	0.219	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13839	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	HKLARRKKR	—	—	—	—	—	—	0.000	—	—	0.878	0.086	0.011	0.271	0.068	0.019	0.030	0.042	0.093	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011610	1.000	1.000	Hsc_gene_7984.t1	—	—	Q65ZG8.1 Period protein homolog lin-42 [Caenorhabditis elegans]	KAI1722747.1 PAS domain-containing protein [Ditylenchus destructor]	No	-0.200

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.967\|GO:0009987_0.824\|GO:0065007_0.817\|GO:0050789_0.810\|GO:0050794_0.796\|GO:0005575_0.792\|GO:0110165_0.785\|GO:0008152_0.707\|GO:0019222_0.707\|GO:0043170_0.699\|GO:0060255_0.699\|GO:0031323_0.698\|GO:0044237_0.698\|GO:0016020_0.693\|GO:0009058_0.682\|GO:0005622_0.679\|GO:0009889_0.678\|GO:0009059_0.675\|GO:0044249_0.675\|GO:0031326_0.674\|GO:0010467_0.673\|GO:0010468_0.671\|GO:0010556_0.671\|GO:0032501_0.646\|GO:0003674_0.633\|GO:0043226_0.626\|GO:0005488_0.613\|GO:0043229_0.606\|GO:0048519_0.595\|GO:0044238_0.587\|GO:0080090_0.587\|GO:0043227_0.585\|GO:0048523_0.574\|GO:0043231_0.561\|GO:0006139_0.556\|GO:0034654_0.556\|GO:0048511_0.556\|GO:0019219_0.553\|GO:0005515_0.552\|GO:0007623_0.552\|GO:0016070_0.551\|GO:0032774_0.551\|GO:0090304_0.551\|GO:0141187_0.551\|GO:0051252_0.546\|GO:0006351_0.542\|GO:0006355_0.541\|GO:2001141_0.541\|GO:0005634_0.539	IPR000014+395-493_401-452+\|IPR035965+396-497+\|IPR050760+394-653+	—	PF14598+395-500+PAS_domain	—	PTHR11269+394-653+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-290;496-939	1.000	291-495	8gci_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.822	100941.400	7.160	14.000	20.660	7.774	51.012	48.988	12.141	8.520	58.360

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	lightyellow	729.515	473.981	46.142	285.473	1400.111	1254.503	235.715	177.539	20.183	1723.941	993.759

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.591	-0.869	2.739	2.261	—	-2.405	-2.939	—	-4.204	—	—	—	—

No JSON data available for plots.

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