Hg_chrom7_TN10mRNA_14669
Organism: Heterodera glycines Gene Locus: chr7:7874838-7875509 Feature type: polypeptideProtein Sequence
Length: 98
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 0.949 | 1.67 | 0.352 | 0.85 | 1.047 | 0.364 | 1.02 | 2.268 | 0.827 | 1.237 | 3.001 | 0.567 | 0.196 | 1.666 | 1.02 | 1.506 | 0.928 | 0.0 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13841
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.181
|
0.021
|
0.411
|
0.319
|
0.548
|
0.132
|
0.027
|
0.171
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011612
|
1.000
|
1.000
|
Hsc_gene_7982.t1
|
Hsc_gene_7982.t1
|
— |
Q9DAJ5.1 Dynein light chain roadblock-type 2 [Mus musculus]
|
KAH7700706.1 dynein light chain 2Bcytoplasmic [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005868|GO:0007018
|
GO:0005575_0.919|GO:0110165_0.901|GO:0005622_0.747|GO:0043226_0.691|GO:0032991_0.597|GO:0043229_0.587
|
IPR004942+6-94+|IPR016561+2-98+
|
SM00960+6-94+
|
PF03259+6-94+Roadblock/LC7_domain
|
G3DSA:3.30.450.30:FF:000009+2-97+Dynein_light_chain_roadblock
|
PTHR10779+4-95+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-98
|
3l9k_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
11216.890
|
9.002
|
3.000
|
32.653
|
6.122
|
57.143
|
42.857
|
18.367
|
14.286
|
46.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
551.138
|
268.718
|
307.764
|
370.382
|
490.206
|
474.416
|
442.580
|
434.348
|
1169.259
|
488.629
|
780.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.326
|
0.376
|
0.373
|
— | — |
-0.232
|
— | — | — | — | — | — |
No JSON data available for plots.