Hg_chrom7_TN10mRNA_14670
Organism: Heterodera glycines Gene Locus: chr7:7876112-7879886 Feature type: polypeptideProtein Sequence
Length: 492
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 1.276 | 0.85 | 1.121 | 0.847 | 0.521 | 0.653 | 2.439 | 1.31 | 1.456 | 0.739 | 1.196 | 1.468 | 1.134 | 1.535 | 0.987 | 0.466 | 0.831 | 0.313 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13842
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRNTAIISHKPKCR
|
46-74
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.668
|
0.284
|
0.027
|
0.648
|
0.118
|
0.110
|
0.101
|
0.046
|
0.065
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011613
|
1.000
|
1.000
|
Hsc_gene_7981.t1
|
Hsc_gene_7981.t1
|
— |
B8AVX5.1 Inositol-pentakisphosphate 2-kinase IPK1 [Oryza sativa Indica Group]
|
KAH7715649.1 Protein Y17G7B.13 [Aphelenchus avenae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0035299
|
GO:0003674_0.875|GO:0008150_0.765|GO:0003824_0.747|GO:0005575_0.730|GO:0110165_0.730|GO:0009987_0.691|GO:0016740_0.689|GO:0016772_0.658|GO:0005622_0.656|GO:0016301_0.654|GO:0016773_0.654|GO:0035299_0.650|GO:0120517_0.650|GO:0180030_0.650|GO:0016020_0.635|GO:0043226_0.606|GO:0043229_0.600|GO:0043227_0.578
|
IPR009286+23-471_26-471+
|
— |
PF06090+26-471+Inositol-pentakisphosphate_2-kinase
|
— |
PTHR14456+23-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
55081.590
|
8.878
|
25.000
|
27.033
|
12.602
|
44.309
|
55.691
|
17.276
|
9.756
|
49.187
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
678.296
|
1541.140
|
382.239
|
464.164
|
785.082
|
739.603
|
841.174
|
543.408
|
89.743
|
913.933
|
560.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.241
|
-1.868
|
0.389
|
0.727
|
— |
0.195
|
-0.548
|
0.771
|
— | — | — | — | — |
No JSON data available for plots.