Hg_chrom7_TN10mRNA_14679
Organism: Heterodera glycines Gene Locus: chr7:7904661-7907794 Feature type: polypeptideProtein Sequence
Length: 157
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.518 | 1.185 | 0.926 | 0.22 | 1.168 | 0.817 | 0.758 | 1.592 | 0.708 | 1.119 | 0.772 | 2.623 | 2.123 | 1.47 | 1.56 | 0.728 | 0.627 | 0.772 | 1.47 | 1.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13851
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— |
RIMKRNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.221
|
0.872
|
0.013
|
0.172
|
0.042
|
0.019
|
0.019
|
0.049
|
0.035
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
AFG25452.1 c34b2.8, partial [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0005575_0.867|GO:0110165_0.856|GO:0009987_0.848|GO:0005622_0.801|GO:0016020_0.780|GO:0005737_0.772|GO:0043226_0.742|GO:0043229_0.727|GO:0043227_0.719|GO:0043231_0.706|GO:0003674_0.648|GO:0005739_0.568
|
IPR009346+3-141_4-134+
|
— |
PF06212+4-134+GRIM-19_protein
|
— |
PTHR12966+3-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-157
|
7vz8_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
18516.140
|
8.059
|
3.500
|
28.025
|
17.834
|
45.223
|
54.777
|
15.924
|
12.102
|
43.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1396.431
|
338.796
|
1178.621
|
1126.552
|
1739.280
|
1634.759
|
1273.707
|
1130.033
|
956.569
|
2233.805
|
1686.418
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.570
|
1.596
|
— |
0.594
|
— |
-0.350
|
-0.639
|
0.316
|
-1.332
|
— | — | — | — |
No JSON data available for plots.