Hg_chrom7_TN10mRNA_14680
Organism: Heterodera glycines Gene Locus: chr7:7909332-7911287 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.267 | 1.415 | 0.403 | 1.038 | 1.097 | 0.556 | 1.362 | 1.383 | 1.315 | 1.061 | 2.06 | 1.405 | 0.748 | 1.429 | 0.778 | 0.51 | 1.12 | 0.0 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
11-48
|
0.971
|
— | — |
0.000
|
— | — |
0.576
|
0.179
|
0.005
|
0.499
|
0.081
|
0.106
|
0.108
|
0.019
|
0.211
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000440
|
1.000
|
7.000
|
Hsc_gene_13582.t1;Hsc_gene_26302.t1;Hsc_gene_26302.t2;Hsc_gene_7977.t1;Hsc_gene_7977.t2;Hsc_gene_7978.t1;Hsc_gene_7979.t1
|
Hsc_gene_7977.t1;Hsc_gene_7977.t2
|
— |
Q7ZV79.1 Uridine-cytidine kinase 2-B [Danio rerio]
|
KAI1716350.1 phosphoribulokinase / uridine kinase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016301
|
GO:0008150_0.917|GO:0009987_0.838|GO:0005575_0.777|GO:0110165_0.749|GO:0005622_0.713|GO:0003674_0.698|GO:0005737_0.642|GO:0008152_0.602|GO:0003824_0.586|GO:0044238_0.582|GO:0044237_0.580|GO:0009058_0.573|GO:0006139_0.536|GO:0034654_0.513
|
IPR000764+17-237+|IPR006083+17-162+|IPR027417+15-230_15-249+
|
— |
PF00485+17-162+Phosphoribulokinase_/_Uridine_kinase_family
|
— |
PTHR10285+14-234+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
242-257
|
1.000
|
1-241
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
29431.820
|
7.442
|
3.500
|
30.739
|
10.506
|
49.027
|
50.973
|
16.732
|
14.008
|
45.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
333.810
|
387.756
|
347.235
|
401.779
|
503.734
|
413.208
|
770.431
|
335.699
|
165.992
|
150.985
|
157.416
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.390
|
— |
0.320
|
0.295
|
-0.272
|
0.910
|
-0.405
|
1.342
|
— | — | — | — | — |
No JSON data available for plots.