Hg_chrom7_TN10mRNA_14684
Organism: Heterodera glycines Gene Locus: chr7:7937837-7941203 Feature type: polypeptideProtein Sequence
Length: 238
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 1.075 | 1.146 | 0.869 | 0.84 | 0.862 | 0.4 | 1.471 | 1.401 | 1.306 | 0.446 | 1.73 | 1.751 | 0.646 | 1.458 | 0.96 | 1.033 | 0.891 | 2.586 | 0.494 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13856
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-17
|
0.782
|
0.675
|
1.000
|
1.000
|
0.100
|
0.283
|
0.101
|
0.330
|
0.057
|
0.080
|
0.164
|
0.089
|
0.294
|
0.824
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001408
|
1.000
|
4.000
|
Hsc_gene_11177.t1;Hsc_gene_13581.t1;Hsc_gene_7976.t1;Hsc_gene_7976.t2
|
Hsc_gene_7976.t1
|
— | — | — |
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.823|GO:0003674_0.741|GO:0005575_0.692|GO:0110165_0.687|GO:0003824_0.657|GO:0016787_0.585|GO:0140096_0.568|GO:0008233_0.558|GO:0004175_0.553
|
IPR001254+58-229+|IPR009003+53-230+|IPR043504+32-236+
|
— |
PF00089+58-229+Trypsin
|
— |
PTHR24253+57-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
27368.370
|
6.595
|
0.500
|
24.370
|
14.286
|
45.378
|
54.622
|
13.025
|
11.345
|
48.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
20.766
|
4.591
|
6.024
|
6.219
|
3.903
|
10.795
|
4.875
|
17.080
|
1.382
|
69.757
|
40.454
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.474
|
-1.136
|
— |
-1.667
|
— | — | — | — | — |