Hg_chrom7_TN10mRNA_14688
Organism: Heterodera glycines Gene Locus: chr7:7953128-7963425 Feature type: polypeptideProtein Sequence
Length: 751
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.61 | 0.726 | 0.735 | 1.11 | 2.868 | 0.935 | 2.53 | 0.651 | 0.954 | 0.424 | 2.193 | 0.703 | 0.768 | 1.304 | 0.913 | 0.808 | 0.646 | 0.512 | 0.47 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13860
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RRGAACRVRRQRRRTH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.256
|
0.041
|
0.436
|
0.192
|
0.350
|
0.347
|
0.056
|
0.502
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011617
|
1.000
|
1.000
|
Hsc_gene_7975.t1
|
Hsc_gene_7973.t1;Hsc_gene_7974.t1
|
— | — |
KAH7699115.1 Protein T14B4.8 [Aphelenchus avenae]
|
No
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-429
|
1.000
|
430-751
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
83653.670
|
6.866
|
8.000
|
24.900
|
9.854
|
54.328
|
45.672
|
14.248
|
10.652
|
49.401
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
250.557
|
182.799
|
449.010
|
205.096
|
71.800
|
56.147
|
144.495
|
196.895
|
116.511
|
518.965
|
346.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.068
|
— |
-1.022
|
-1.545
|
-0.341
|
1.375
|
1.709
|
— | — | — |
-2.586
|
— | — |
No JSON data available for plots.