Hg_chrom7_TN10mRNA_14689
Organism: Heterodera glycines Gene Locus: chr7:7974612-7985014 Feature type: polypeptideProtein Sequence
Length: 1,000
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.407 | 1.07 | 0.8 | 0.862 | 0.45 | 2.205 | 1.131 | 1.95 | 0.756 | 1.176 | 0.379 | 1.471 | 1.111 | 0.923 | 0.959 | 1.314 | 0.836 | 0.758 | 0.231 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13861
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RKRK,RPRR,KNPRKR
|
50-72
|
0.995
|
20-59
|
0.996
|
— | — |
0.000
|
— | — |
0.837
|
0.139
|
0.018
|
0.343
|
0.060
|
0.067
|
0.037
|
0.014
|
0.061
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011618
|
1.000
|
1.000
|
Hsc_gene_7971.t1
|
Hsc_gene_25942.t1;Hsc_gene_7971.t1
|
— |
Q18192.2 Nuclear hormone receptor family member nhr-31 [Caenorhabditis elegans]
|
KAI1722738.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.876|GO:0003674_0.819|GO:0005488_0.810|GO:0009987_0.808|GO:0065007_0.793|GO:0005575_0.791|GO:0050789_0.789|GO:0050794_0.780|GO:0110165_0.768|GO:0097159_0.756|GO:0003676_0.720|GO:0008152_0.720|GO:0019222_0.720|GO:0031323_0.720|GO:0044237_0.720|GO:0043170_0.716|GO:0060255_0.716|GO:0044238_0.715|GO:0080090_0.715|GO:0009058_0.707|GO:0009889_0.707|GO:0031326_0.707|GO:0044249_0.707|GO:0009059_0.706|GO:0010467_0.706|GO:0010556_0.705|GO:0006139_0.699|GO:0016070_0.699|GO:0019219_0.699|GO:0051252_0.699|GO:0090304_0.699|GO:0032774_0.692|GO:0034654_0.692|GO:0141187_0.692|GO:0003677_0.689|GO:0010468_0.689|GO:0043565_0.689|GO:0005622_0.688|GO:0006351_0.686|GO:0006355_0.679|GO:2001141_0.679|GO:0043226_0.677|GO:0043229_0.664|GO:0003690_0.648|GO:1990837_0.648|GO:0006357_0.637|GO:0006366_0.637|GO:0000976_0.595|GO:0001067_0.595|GO:0048518_0.568|GO:0016020_0.564|GO:0048522_0.559|GO:0050896_0.559|GO:0032501_0.547|GO:0032502_0.515|GO:0048856_0.515|GO:0009893_0.503|GO:0031325_0.501
|
IPR000536+366-645_395-629_404-616+|IPR001628+117-188_117-192_119-187_120-136_120-146_136-151_169-177_177-185+|IPR013088+114-240+|IPR035500+369-643_375-650+|IPR049636+120-195+|IPR052496+356-459+
|
SM00399+117-188+|SM00430+404-616+
|
PF00104+395-629+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+119-187+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000006+111-221+Nuclear_receptor_subfamily_5_group_A_member
|
PTHR47519+356-459+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
188-302;683-892
|
3.000
|
1-187;303-682;893-1000
|
4iqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
105979.880
|
7.638
|
20.500
|
18.200
|
9.700
|
45.700
|
54.300
|
11.100
|
7.100
|
57.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1655.961
|
357.197
|
1380.158
|
2927.751
|
2140.398
|
921.763
|
537.298
|
889.161
|
450.081
|
3474.621
|
2178.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.722
|
2.897
|
1.192
|
-0.483
|
-1.201
|
-0.770
|
— |
-0.588
|
— | — | — | — | — |
No JSON data available for plots.