Hg_chrom7_TN10mRNA_14693
Organism: Heterodera glycines Gene Locus: chr7:8006890-8028066 Feature type: polypeptideProtein Sequence
Length: 1,997
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.252 | 0.943 | 1.083 | 0.432 | 0.751 | 1.066 | 0.894 | 1.778 | 1.091 | 1.523 | 0.819 | 1.679 | 0.848 | 0.722 | 1.012 | 0.937 | 1.002 | 1.017 | 0.732 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13865
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRKR,RRYAADGHLKGDDVPNKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.132
|
0.083
|
0.180
|
0.557
|
0.474
|
0.381
|
0.006
|
0.783
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004645
|
1.000
|
2.000
|
Hsc_gene_7966.t1;Hsc_gene_7966.t2
|
Hsc_gene_7966.t1;Hsc_gene_7966.t2
|
— |
Q9UL62.1 Short transient receptor potential channel 5 [Homo sapiens]
|
KAI1712769.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005262|GO:0005515|GO:0016020|GO:0070588
|
GO:0008150_0.916|GO:0005575_0.890|GO:0110165_0.890|GO:0009987_0.881|GO:0016020_0.805|GO:0003674_0.761|GO:0006810_0.743|GO:0051179_0.743|GO:0051234_0.743|GO:0071944_0.725|GO:0005886_0.718|GO:0055085_0.574|GO:0005215_0.560|GO:0065007_0.551|GO:0022857_0.534|GO:0006811_0.532|GO:0034220_0.528|GO:0015267_0.520|GO:0022803_0.520|GO:0015075_0.509|GO:0006812_0.504|GO:0098655_0.504|GO:0005216_0.502
|
IPR002110+400-490_428-457_428-460_461-490_495-527_532-561_532-564_567-594_589-661_599-628_599-631_632-655_632-662_666-695_666-698_671-762_699-728_699-731_732-761_732-764_766-797_766-800_771-858_802-831_802-834_835-865_835-867_880-918_923-954_957-1025_962-991_962-994_995-1024_995-1027_996-1011_1028-1058_1028-1059_1028-1061_1062-1091_1062-1094_1067-1153_1095-1117_1095-1124_1132-1161_1168-1197_1168-1200_1173-1218_1184-1198_1201-1231_1247-1317_1260-1289_1260-1292_1294-1324_1294-1326_1328-1357_1328-1360_1333-1420_1361-1390_1361-1393_1394-1423+|IPR002153+1818-1839_1840-1853+|IPR036770+379-763_398-579_593-945_736-1117_764-835_836-947_950-1064_1065-1224_1171-1423_1242-1445+|IPR051165+956-1422+
|
SM00248+428-457_461-490_495-527_532-561_567-594_599-628_632-662_666-695_699-728_732-761_766-797_802-831_835-865_880-918_923-954_962-991_995-1024_1028-1058_1062-1091_1095-1124_1132-1161_1168-1197_1201-1231_1260-1289_1294-1324_1328-1357_1361-1390_1394-1423+
|
PF00023+1028-1059+Ankyrin_repeat|PF12796+400-490_589-661_671-762_771-858_957-1025_1067-1153_1247-1317_1333-1420+Ankyrin_repeats_(3_copies)|PF13637+1173-1218+Ankyrin_repeats_(many_copies)
|
— |
PTHR24123+956-1422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-386;1972-1997
|
1.000
|
387-1971
|
1n0r_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
217073.650
|
7.586
|
33.500
|
24.387
|
9.264
|
45.268
|
54.732
|
13.921
|
10.466
|
52.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
896.507
|
81.029
|
355.866
|
118.910
|
48.310
|
45.847
|
190.968
|
95.704
|
1.282
|
3570.018
|
2040.560
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.905
|
0.416
|
-1.472
|
-1.331
|
— |
2.068
|
0.960
|
1.137
|
-11.255
|
6.388
|
-5.675
|
— | — |
No JSON data available for plots.