SCN Proteipedia

Hg_chrom7_TN10mRNA_14697

Organism: Heterodera glycines Gene Locus: chr7:8038225-8048485 Feature type: polypeptide

Protein Sequence

Length: 1,999

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.902	1.163	0.728	0.656	0.85	1.372	0.679	1.401	1.467	1.447	0.599	1.766	1.265	1.145	1.001	1.051	0.951	0.902	0.539	0.853	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13869	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	LGEV	—	—	—	—	—	—	0.000	—	—	0.370	0.096	0.004	0.666	0.117	0.185	0.177	0.045	0.106	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001323	2.000	3.000	Hsc_gene_12576.t1;Hsc_gene_2106.t1;Hsc_gene_2106.t2	Hsc_gene_12575.t1;Hsc_gene_12576.t1;Hsc_gene_14857.t1;Hsc_gene_2106.t1;Hsc_gene_2106.t2;Hsc_gene_2107.t1	—	Q20937.3 CCR4-NOT transcription complex subunit let-711 [Caenorhabditis elegans]	KAI1717100.1 CCR4-Not complex component, not1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0017148\|GO:0030015	GO:0008150_0.970\|GO:0005575_0.788\|GO:0110165_0.787\|GO:0009987_0.775\|GO:0032502_0.747\|GO:0065007_0.716\|GO:0005622_0.714\|GO:0050789_0.696\|GO:0005737_0.643\|GO:0032501_0.601\|GO:0043226_0.533\|GO:0050794_0.524\|GO:0043229_0.504	IPR007196+1578-1786_1829-1982+\|IPR024557+1122-1269+\|IPR032191+780-1006+\|IPR032193+531-688+\|IPR032194+259-402+\|IPR038535+528-697+\|IPR040398+16-1313+	—	PF04054+1578-1786_1829-1982+CCR4-Not_complex_component,_Not1\|PF12842+1122-1269+CCR4-Not_complex,_Not1_subunit,_domain_of_unknown_function_DUF3819\|PF16415+780-1006+CCR4-NOT_transcription_complex_subunit_1_CAF1-binding_domain\|PF16417+531-688+CCR4-NOT_transcription_complex_subunit_1_TTP_binding_domain\|PF16418+259-402+CCR4-NOT_transcription_complex_subunit_1_HEAT_repeat	—	PTHR13162+16-1313+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;1331-1390;1780-1829	3.000	2-1330;1391-1779;1830-1999	4c0d_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	222439.010	7.300	23.000	20.760	10.955	44.272	55.728	11.656	9.105	49.425

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	3715.511	6257.948	3650.088	2871.860	3338.146	4549.565	8068.137	3893.427	3393.427	1474.351	2296.812

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.006	-1.261	-0.238	0.185	0.461	0.836	-0.332	1.194	—	—	—	—	—

No JSON data available for plots.

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