Hg_chrom7_TN10mRNA_14699
Organism: Heterodera glycines Gene Locus: chr7:8053456-8061035 Feature type: polypeptideProtein Sequence
Length: 831
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 0.784 | 1.466 | 0.29 | 1.464 | 1.419 | 0.616 | 0.782 | 0.909 | 1.09 | 1.039 | 1.345 | 0.969 | 1.018 | 1.228 | 0.636 | 1.046 | 0.966 | 1.389 | 1.097 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRGCRCEGDLVKRFRKE,KRKVWEKQPKKKAKKGGKPKKRHA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.194
|
0.167
|
0.006
|
0.167
|
0.866
|
0.139
|
0.379
|
0.007
|
0.132
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011623
|
1.000
|
1.000
|
Hsc_gene_2110.t1
|
Hsc_gene_14851.t1;Hsc_gene_14852.t1;Hsc_gene_2110.t1;Hsc_gene_2110.t2
|
— |
Q9UGP8.2 Translocation protein SEC63 homolog [Homo sapiens]
|
KAI1712768.1 sec63 brl domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.853|GO:0110165_0.851|GO:0016020_0.776|GO:0005622_0.716|GO:0008150_0.703|GO:0071944_0.695|GO:0005886_0.689|GO:0009987_0.670|GO:0043226_0.668|GO:0043229_0.640|GO:0043227_0.598|GO:0043231_0.590|GO:0005737_0.583
|
IPR001623+103-157_104-154_104-160_104-165+|IPR004179+216-787_236-471+|IPR014756+450-791+|IPR035892+675-795+|IPR036869+98-179_100-202+
|
SM00271+103-157+|SM00973+216-787+
|
PF00226+104-160+DnaJ_domain|PF02889+236-471+Sec63_Brl_domain
|
— |
PTHR24075+1-825+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
476-711;782-831
|
2.000
|
1-475;712-781
|
2cug_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
95085.920
|
4.786
|
-26.500
|
31.288
|
10.590
|
51.023
|
48.977
|
14.440
|
16.847
|
47.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
3271.670
|
6010.206
|
2788.674
|
3120.512
|
4082.002
|
4732.871
|
3664.074
|
1854.941
|
3810.887
|
1610.411
|
2553.472
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.337
|
-1.083
|
0.271
|
0.355
|
0.228
|
-0.358
|
-1.456
|
1.125
|
— | — | — | — | — |
No JSON data available for plots.