Hg_chrom7_TN10mRNA_14702
Organism: Heterodera glycines Gene Locus: chr7:8068982-8070269 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 1.96 | 1.115 | 0.661 | 0.702 | 1.277 | 0.593 | 1.341 | 0.766 | 1.398 | 0.755 | 0.902 | 2.554 | 0.516 | 1.173 | 1.314 | 0.942 | 0.755 | 1.179 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13874
|
— | — |
2.333
|
3.000
|
3.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
20-53
|
0.867
|
7-47
|
0.998
|
— | — |
0.000
|
— | — |
0.547
|
0.361
|
0.010
|
0.457
|
0.159
|
0.340
|
0.173
|
0.024
|
0.055
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002244
|
3.000
|
1.000
|
Hsc_gene_13962.t1
|
Hsc_gene_13962.t1
|
— |
B4IXE0.1 Ubiquitin carboxyl-terminal hydrolase 36 [Drosophila grimshawi]
|
KAI1731508.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.892|GO:0005575_0.818|GO:0110165_0.808|GO:0003674_0.778|GO:0005622_0.723|GO:0008152_0.700|GO:0044238_0.694|GO:0043170_0.687|GO:0016020_0.673|GO:0003824_0.646|GO:0009987_0.638|GO:0016787_0.631|GO:0140096_0.630|GO:0019538_0.626|GO:0065007_0.624|GO:0008233_0.617|GO:0043226_0.615|GO:0005737_0.613|GO:0050789_0.612|GO:0019783_0.605|GO:0101005_0.605|GO:0043229_0.603|GO:0043227_0.588|GO:0043231_0.576|GO:0004843_0.532|GO:0008234_0.532|GO:0050794_0.509
|
IPR001394+1-242+|IPR028889+1-261+|IPR038765+1-248+|IPR050185+1-242+
|
— |
PF00443+1-242+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+1-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-261
|
8oyp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
29759.500
|
7.735
|
4.500
|
23.755
|
14.559
|
52.107
|
47.893
|
13.410
|
10.345
|
50.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.