Hg_chrom7_TN10mRNA_14704
Organism: Heterodera glycines Gene Locus: chr7:8077607-8085750 Feature type: polypeptideProtein Sequence
Length: 1,239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 1.427 | 1.453 | 0.918 | 1.251 | 1.8 | 0.682 | 0.928 | 1.004 | 0.971 | 0.88 | 1.804 | 1.525 | 0.745 | 0.988 | 1.107 | 0.794 | 0.819 | 0.559 | 0.427 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13876
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
AKKTK,RRNDGSDIGLFEKKKCV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.425
|
0.097
|
0.019
|
0.499
|
0.087
|
0.138
|
0.149
|
0.082
|
0.346
|
0.344
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002440
|
3.000
|
1.000
|
Hsc_gene_2127.t1
|
— | — | — |
KAI3422631.1 hypothetical protein GPALN_013129 [Globodera pallida]
|
XP_062100081
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-181;352-402;1032-1239
|
2.000
|
182-351;403-1031
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
139592.900
|
4.623
|
-48.500
|
28.006
|
9.524
|
53.753
|
46.247
|
12.510
|
15.496
|
50.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
270.018
|
124.659
|
261.307
|
327.056
|
701.418
|
356.140
|
624.007
|
99.476
|
36.709
|
218.524
|
140.604
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
1.255
|
0.434
|
1.070
|
-0.964
|
0.820
|
-1.944
|
2.791
|
— | — | — | — | — |
No JSON data available for plots.