Hg_chrom7_TN10mRNA_14707
Organism: Heterodera glycines Gene Locus: chr7:8095329-8110356 Feature type: polypeptideProtein Sequence
Length: 1,769
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.4 | 1.262 | 0.997 | 0.39 | 0.867 | 0.855 | 0.639 | 1.526 | 0.904 | 1.337 | 0.48 | 0.765 | 1.256 | 1.391 | 1.257 | 1.123 | 0.871 | 1.122 | 0.478 | 0.416 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13879
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.739
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RRRSALSLTATLRHRRGDR,RRSALSLTATLRHRRGDRR
|
9-29
|
0.985
|
65-96
|
0.978
|
1-25
|
0.968
|
1.000
|
1.000
|
1.000
|
0.252
|
0.026
|
0.020
|
0.260
|
0.148
|
0.345
|
0.263
|
0.045
|
0.764
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002441
|
1.000
|
3.000
|
Hsc_gene_2114.t1;Hsc_gene_2117.t1;Hsc_gene_2117.t2
|
— | — |
Q5F226.1 Protocadherin Fat 2 [Mus musculus]
|
AFN27462.1 protocadherin-11 X-linked precursor, partial [Curruca communis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0008150_0.906|GO:0005575_0.689|GO:0110165_0.689|GO:0032502_0.583|GO:0032501_0.570|GO:0048856_0.569|GO:0016020_0.562|GO:0009987_0.553
|
IPR002126+1238-1358_1359-1482+|IPR015919+1347-1472+|IPR020894+1346-1356+|IPR050971+1245-1387+
|
— | — | — |
PTHR24025+1245-1387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
448-491;885-932
|
3.000
|
1-447;492-884;933-1769
|
5vvm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
191698.940
|
6.601
|
3.000
|
23.064
|
9.610
|
44.997
|
55.003
|
12.380
|
10.684
|
57.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
866.211
|
414.116
|
109.460
|
114.877
|
436.054
|
390.830
|
293.320
|
171.586
|
2762.878
|
993.673
|
1751.904
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.149
|
-1.987
|
— |
1.892
|
— |
-0.405
|
-1.304
|
0.920
|
— |
-4.415
|
— | — | — |