Hg_chrom7_TN10mRNA_14710
Organism: Heterodera glycines Gene Locus: chr7:8119974-8125777 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.34 | 0.967 | 1.105 | 0.552 | 0.773 | 1.149 | 1.01 | 1.28 | 0.853 | 0.822 | 0.558 | 1.224 | 0.978 | 1.077 | 2.024 | 1.303 | 0.97 | 0.8 | 0.246 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RKKR,RRKR,RRKK
|
43-65
|
0.960
|
— | — | — | — |
0.000
|
— | — |
0.297
|
0.207
|
0.036
|
0.576
|
0.123
|
0.270
|
0.226
|
0.041
|
0.692
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002442
|
2.000
|
2.000
|
Hsc_gene_2120.t1;Hsc_gene_2120.t2
|
Hsc_gene_2120.t1;Hsc_gene_2120.t2
|
— |
P32252.1 Ras-like protein rasB [Dictyostelium discoideum]
|
KAI1712776.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.828|GO:0005575_0.801|GO:0110165_0.790|GO:0009987_0.745|GO:0065007_0.680|GO:0050789_0.669|GO:0050794_0.655|GO:0003674_0.637|GO:0016020_0.634|GO:0005622_0.632|GO:0043226_0.534|GO:0005488_0.516
|
IPR001806+380-625_387-550+|IPR027417+383-555_383-556+|IPR051641+83-315+
|
SM00173+382-552+|SM00175+385-552+
|
PF00071+387-550+Ras_family
|
— |
PTHR45775+83-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-375
|
1.000
|
376-625
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.936
|
67537.530
|
10.074
|
26.000
|
26.880
|
7.520
|
50.560
|
49.440
|
16.160
|
10.720
|
57.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
— |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.