Hg_chrom7_TN10mRNA_14711
Organism: Heterodera glycines Gene Locus: chr7:8119974-8129159 Feature type: polypeptideProtein Sequence
Length: 595
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.212 | 1.133 | 1.131 | 0.637 | 0.84 | 1.12 | 0.7 | 1.092 | 0.784 | 0.84 | 0.56 | 1.285 | 0.887 | 1.131 | 2.024 | 1.561 | 1.019 | 0.84 | 0.259 | 0.445 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RKKR,RRKR,RRKK
|
— | — |
39-59
|
0.921
|
— | — |
0.000
|
— | — |
0.309
|
0.178
|
0.030
|
0.593
|
0.123
|
0.253
|
0.219
|
0.036
|
0.638
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002442
|
2.000
|
2.000
|
Hsc_gene_2120.t1;Hsc_gene_2120.t2
|
Hsc_gene_2120.t1;Hsc_gene_2120.t2
|
— |
P32252.1 Ras-like protein rasB [Dictyostelium discoideum]
|
KAI1712776.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.829|GO:0005575_0.803|GO:0110165_0.795|GO:0009987_0.749|GO:0065007_0.692|GO:0050789_0.678|GO:0050794_0.666|GO:0016020_0.643|GO:0005622_0.635|GO:0003674_0.632|GO:0043226_0.541|GO:0005488_0.521
|
IPR001806+350-595_357-520+|IPR027417+353-525_353-526+|IPR051641+94-285+
|
SM00173+352-522+|SM00175+355-522+
|
PF00071+357-520+Ras_family
|
— |
PTHR45775+94-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-345
|
1.000
|
346-595
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
65123.670
|
9.514
|
20.500
|
27.059
|
7.227
|
53.445
|
46.555
|
15.798
|
11.261
|
57.815
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
123.619
|
99.859
|
119.264
|
25.978
|
7.831
|
6.021
|
2.132
|
28.587
|
362.035
|
160.680
|
246.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.079
|
-2.087
|
-1.755
|
— | — |
2.148
|
-3.610
|
— |
-3.605
|
-4.287
|
— | — |
No JSON data available for plots.