Hg_chrom7_TN10mRNA_14715
Organism: Heterodera glycines Gene Locus: chr7:8153279-8157930 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.752 | 0.535 | 0.304 | 1.324 | 1.885 | 0.595 | 1.029 | 2.026 | 0.994 | 0.624 | 1.211 | 0.899 | 1.075 | 0.96 | 1.008 | 1.157 | 1.114 | 0.452 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13887
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.147
|
0.008
|
0.175
|
0.691
|
0.393
|
0.415
|
0.021
|
0.656
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011627
|
1.000
|
1.000
|
Hsc_gene_2126.t1
|
Hsc_gene_2126.t1
|
— |
Q27433.1 Mechanosensory protein 2 [Caenorhabditis elegans]
|
KAI3413997.1 Mechanosensory protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.927|GO:0110165_0.917|GO:0016020_0.862|GO:0071944_0.812|GO:0005886_0.802|GO:0008150_0.793|GO:0009987_0.626|GO:0043226_0.572|GO:0003674_0.571|GO:0065007_0.526|GO:0005488_0.514|GO:0043227_0.513|GO:0050789_0.505|GO:0005622_0.504
|
IPR001107+81-240_84-256+|IPR001972+88-110_137-158_172-189_192-215_216-234_235-256_260-283+|IPR018080+196-224+|IPR036013+114-246_120-230+|IPR043202+36-311+
|
SM00244+81-240+
|
PF01145+84-256+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+120-230+band_7_protein_AGAP004871
|
PTHR10264+36-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-340
|
9oh9_P
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
37454.820
|
5.660
|
-3.500
|
21.765
|
8.235
|
46.471
|
53.529
|
10.882
|
10.882
|
49.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightgreen
|
2163.264
|
1412.303
|
4943.590
|
1338.628
|
2329.715
|
5541.516
|
1757.667
|
5765.278
|
390.190
|
513.378
|
460.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.579
|
-0.214
|
-1.777
|
0.768
|
1.265
|
-1.647
|
— |
-1.576
|
— | — | — | — | — |
No JSON data available for plots.