Hg_chrom7_TN10mRNA_14718
Organism: Heterodera glycines Gene Locus: chr7:8168064-8170733 Feature type: polypeptideProtein Sequence
Length: 375
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.209 | 0.496 | 0.388 | 0.46 | 0.444 | 3.761 | 1.492 | 0.8 | 0.83 | 0.937 | 0.242 | 2.51 | 0.815 | 1.487 | 0.653 | 1.371 | 0.612 | 0.525 | 0.615 | 1.333 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13889
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
8-Eggs_J4_Males
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— |
3-34
|
0.976
|
26-46
|
0.972
|
1-25
|
0.918
|
0.657
|
0.000
|
0.000
|
0.183
|
0.115
|
0.158
|
0.583
|
0.151
|
0.197
|
0.167
|
0.041
|
0.398
|
0.424
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011628
|
1.000
|
1.000
|
Hsc_gene_2129.t1
|
— | — | — |
KAH7700230.1 Glutaredoxin [Aphelenchus avenae]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.920|GO:0016020_0.855|GO:0005622_0.840|GO:0043226_0.797|GO:0043227_0.763|GO:0005737_0.757|GO:0008150_0.747|GO:0043229_0.714|GO:0009987_0.702|GO:0003674_0.693|GO:0043231_0.670|GO:0050896_0.516
|
IPR002109+281-346+|IPR014025+281-299_329-342_343-356+|IPR036249+270-367+
|
— |
PF00462+281-346+Glutaredoxin
|
— |
PTHR46679+167-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
48-237
|
2.000
|
1-47;238-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.925
|
39857.670
|
7.341
|
3.000
|
11.200
|
9.867
|
41.333
|
58.667
|
6.400
|
4.800
|
53.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
371.141
|
102.294
|
3.005
|
6.590
|
59.672
|
256.288
|
35.083
|
71.166
|
0.000
|
1423.454
|
813.402
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.296
|
-4.090
|
1.234
|
3.145
|
2.115
|
-2.859
|
-1.960
|
-0.875
|
-9.188
|
— | — | — | — |