Hg_chrom7_TN10mRNA_14719
Organism: Heterodera glycines Gene Locus: chr7:8171340-8173172 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 0.442 | 0.415 | 0.524 | 1.077 | 2.145 | 0.996 | 1.141 | 1.183 | 0.873 | 0.922 | 2.908 | 0.634 | 1.462 | 1.63 | 0.598 | 0.686 | 1.383 | 0.0 | 0.783 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13890
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.526
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRIR
|
42-62
|
0.928
|
— | — | — | — |
0.000
|
— | — |
0.574
|
0.372
|
0.034
|
0.582
|
0.103
|
0.085
|
0.077
|
0.028
|
0.102
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004648
|
2.000
|
1.000
|
Hsc_gene_2131.t1
|
Hsc_gene_12301.t1;Hsc_gene_2131.t1
|
— |
P48152.1 Small ribosomal subunit protein uS3 [Caenorhabditis elegans]
|
KAI1733177.1 KH domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0006412|GO:0015935
|
GO:0005575_0.912|GO:0110165_0.901|GO:0005622_0.813|GO:0003674_0.758|GO:0043226_0.716|GO:0005737_0.713|GO:0043229_0.701|GO:0005488_0.613|GO:0016020_0.590|GO:0008150_0.568|GO:0005829_0.566|GO:0043228_0.544|GO:0043232_0.544|GO:0043227_0.519|GO:0009987_0.517
|
IPR001351+108-190+|IPR004044+22-95_23-94+|IPR005703+10-214+|IPR009019+15-101+|IPR015946+1-93+|IPR018280+149-185+|IPR036419+95-235_96-194+
|
— |
PF00189+108-190+Ribosomal_protein_S3,_C-terminal_domain|PF07650+22-95+KH_domain
|
G3DSA:3.30.1140.32:FF:000004+95-230+40S_ribosomal_protein_S3|G3DSA:3.30.300.20:FF:000021+3-94+40S_ribosomal_protein_S3
|
PTHR11760+7-198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;186-263
|
1.000
|
3-185
|
9cai_AD
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
29237.100
|
10.371
|
17.000
|
25.095
|
7.224
|
43.726
|
56.274
|
16.350
|
8.745
|
47.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8156.062
|
3562.262
|
6256.222
|
12678.752
|
13142.762
|
10170.931
|
5855.499
|
3172.185
|
7552.646
|
9453.808
|
8639.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
1.694
|
1.127
|
— |
-0.354
|
-0.787
|
-1.788
|
1.028
|
— | — | — | — | — |
No JSON data available for plots.