Hg_chrom7_TN10mRNA_14720
Organism: Heterodera glycines Gene Locus: chr7:8173328-8176725 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.733 | 1.024 | 0.777 | 1.164 | 0.693 | 1.073 | 0.788 | 1.201 | 0.822 | 0.785 | 1.325 | 1.126 | 1.126 | 1.057 | 1.126 | 0.886 | 1.263 | 0.866 | 1.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13891
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.429
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PKEKRQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.158
|
0.068
|
0.552
|
0.123
|
0.131
|
0.126
|
0.016
|
0.101
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011629
|
1.000
|
1.000
|
Hsc_gene_2132.t1
|
Hsc_gene_2132.t1
|
— |
Q4R333.1 Actin-like protein 6A [Macaca fascicularis]
|
KAI1722733.1 actin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0008150_0.869|GO:0110165_0.869|GO:0005622_0.780|GO:0009987_0.749|GO:0043226_0.710|GO:0016020_0.698|GO:0043229_0.696|GO:0071840_0.599|GO:0016043_0.592|GO:0032502_0.584|GO:0048856_0.584|GO:0043227_0.574|GO:0043231_0.547|GO:0043228_0.526|GO:0043232_0.526|GO:0005737_0.514
|
IPR004000+8-443_11-444_13-437_88-110_142-155_167-186+|IPR004001+425-433+|IPR043129+9-180_173-443+
|
SM00268+11-444+
|
PF00022+8-443+Actin
|
— |
PTHR11937+13-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
48786.220
|
5.219
|
-6.500
|
24.550
|
11.261
|
43.694
|
56.306
|
11.937
|
12.613
|
54.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1187.968
|
960.628
|
1145.890
|
1344.038
|
1702.481
|
1565.408
|
1692.189
|
847.306
|
897.673
|
1052.378
|
986.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.348
|
0.338
|
0.309
|
— | — |
-0.993
|
1.142
|
— | — | — | — | — |
No JSON data available for plots.