Hg_chrom7_TN10mRNA_14721
Organism: Heterodera glycines Gene Locus: chr7:8176888-8178421 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.28 | 0.89 | 0.609 | 0.33 | 0.638 | 1.35 | 0.627 | 1.435 | 0.957 | 1.552 | 0.58 | 1.407 | 2.525 | 0.644 | 0.976 | 0.615 | 1.098 | 1.015 | 3.681 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13892
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
9-29
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.189
|
0.201
|
0.004
|
0.197
|
0.654
|
0.418
|
0.483
|
0.007
|
0.227
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011630
|
1.000
|
1.000
|
Hsc_gene_2133.t2
|
Hsc_gene_2133.t1;Hsc_gene_2133.t2
|
— |
Q5R9I4.1 Golgi apparatus membrane protein TVP23 homolog B [Pongo abelii]
|
KAI6184015.1 Golgi apparatus membrane protein TVP23-like protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.886|GO:0110165_0.880|GO:0071944_0.870|GO:0005886_0.854|GO:0016020_0.854|GO:0005622_0.730|GO:0005737_0.730|GO:0043226_0.691|GO:0005773_0.685|GO:0043227_0.685|GO:0043229_0.685|GO:0043231_0.685|GO:0008150_0.668|GO:0012505_0.659|GO:0009987_0.621|GO:0005794_0.572|GO:0006810_0.534|GO:0051179_0.534|GO:0051234_0.534
|
IPR008564+14-191_16-154+
|
— |
PF05832+16-154+Eukaryotic_protein_of_unknown_function_(DUF846)
|
— |
PTHR13019+14-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-209
|
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
24025.870
|
9.057
|
6.000
|
18.660
|
18.660
|
38.756
|
61.244
|
11.483
|
7.177
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkorange
|
861.113
|
1038.110
|
705.782
|
1019.465
|
1469.172
|
1869.957
|
1097.317
|
1152.422
|
308.084
|
404.222
|
363.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.785
|
-0.163
|
0.638
|
0.495
|
0.363
|
-0.759
|
-0.802
|
— | — | — | — | — | — |
No JSON data available for plots.