Hg_chrom7_TN10mRNA_14722
Organism: Heterodera glycines Gene Locus: chr7:8192092-8200393 Feature type: polypeptideProtein Sequence
Length: 831
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.979 | 0.459 | 0.332 | 0.321 | 3.055 | 1.06 | 3.369 | 0.749 | 0.911 | 0.456 | 0.849 | 1.203 | 1.435 | 0.688 | 1.444 | 1.124 | 0.565 | 0.185 | 0.672 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13893
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
PLEKRPR
|
— | — |
57-86
|
0.994
|
1-25
|
0.771
|
0.813
|
0.000
|
0.000
|
0.886
|
0.069
|
0.006
|
0.367
|
0.114
|
0.088
|
0.069
|
0.020
|
0.057
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011631
|
1.000
|
1.000
|
Hsc_gene_2137.t1
|
Hsc_gene_2137.t1
|
— |
Q9U325.1 MEF2 transcription factor homolog [Caenorhabditis elegans]
|
KAF7637448.1 MADS-box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000977|GO:0003677|GO:0045944|GO:0046983
|
GO:0008150_0.971|GO:0065007_0.859|GO:0050789_0.855|GO:0009987_0.800|GO:0050794_0.795|GO:0032502_0.789|GO:0048856_0.789|GO:0005575_0.783|GO:0110165_0.778|GO:0003674_0.748|GO:0005488_0.732|GO:0048518_0.731|GO:0008152_0.730|GO:0019222_0.730|GO:0031323_0.730|GO:0044237_0.730|GO:0032501_0.724|GO:0043170_0.720|GO:0060255_0.720|GO:0016020_0.709|GO:0044238_0.707|GO:0080090_0.707|GO:0009058_0.705|GO:0009889_0.705|GO:0031326_0.703|GO:0044249_0.703|GO:0005622_0.701|GO:0009059_0.701|GO:0010556_0.701|GO:0010467_0.699|GO:0010468_0.699|GO:0007275_0.698|GO:0048522_0.695|GO:0048731_0.690|GO:0043226_0.682|GO:0006139_0.674|GO:0019219_0.674|GO:0016070_0.671|GO:0051252_0.671|GO:0090304_0.671|GO:0097159_0.662|GO:0043229_0.661|GO:0034654_0.658|GO:0009893_0.657|GO:0006351_0.656|GO:0032774_0.656|GO:0141187_0.656|GO:0006355_0.655|GO:2001141_0.655|GO:0003676_0.653|GO:0010604_0.653|GO:0031325_0.650|GO:0009891_0.645|GO:0031328_0.640|GO:0010557_0.637|GO:0045935_0.633|GO:0051254_0.633|GO:0043227_0.615|GO:1902680_0.609|GO:0003677_0.605|GO:0003690_0.604|GO:0043565_0.604|GO:1990837_0.604|GO:0045893_0.603|GO:0043231_0.601|GO:0000976_0.582|GO:0001067_0.582|GO:0005634_0.577|GO:0006357_0.555|GO:0006366_0.555|GO:0005515_0.507|GO:0045944_0.505
|
IPR002100+357-416_357-417_359-379_359-413_366-413_379-394_394-415+|IPR033896+358-434+|IPR036879+358-447_369-451+|IPR050142+357-754+
|
SM00432+357-416+
|
PF00319+366-413+SRF-type_transcription_factor_(DNA-binding_and_dimerisation_domain)
|
G3DSA:3.40.1810.10:FF:000001+369-451+Myocyte-specific_enhancer_factor_2A_homolog
|
PTHR48019+357-754+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-375;419-506;560-831
|
3.000
|
1-181;376-418;507-559
|
6wc2_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
89334.950
|
9.716
|
44.000
|
17.569
|
13.598
|
50.662
|
49.338
|
13.117
|
4.452
|
54.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1854.246
|
1751.357
|
4992.680
|
3086.413
|
1016.647
|
949.492
|
728.918
|
3021.822
|
2372.552
|
502.664
|
1304.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.284
|
0.680
|
-0.587
|
-1.635
|
— |
-0.373
|
1.572
|
-1.914
|
2.125
|
— | — | — | — |