Hg_chrom7_TN10mRNA_14726
Organism: Heterodera glycines Gene Locus: chr7:8211382-8218001 Feature type: polypeptideProtein Sequence
Length: 854
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.389 | 1.225 | 0.852 | 0.323 | 0.644 | 2.312 | 0.822 | 1.874 | 0.911 | 0.728 | 0.479 | 1.378 | 0.683 | 1.464 | 1.171 | 1.305 | 0.749 | 0.994 | 0.36 | 0.62 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13896
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.889
|
0.089
|
0.004
|
0.360
|
0.046
|
0.040
|
0.043
|
0.022
|
0.087
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002444
|
3.000
|
1.000
|
Hsc_gene_19195.t1
|
— | — |
Q94361.4 E3 SUMO-protein ligase gei-17 [Caenorhabditis elegans]
|
KAI1722548.1 PINIT domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.963|GO:0003674_0.836|GO:0009987_0.835|GO:0008152_0.829|GO:0005575_0.822|GO:0110165_0.822|GO:0043170_0.809|GO:0065007_0.804|GO:0050789_0.791|GO:0044238_0.751|GO:0019222_0.724|GO:0050794_0.724|GO:0005622_0.717|GO:0044237_0.692|GO:0060255_0.691|GO:0016020_0.663|GO:0009058_0.662|GO:0031323_0.660|GO:0009059_0.651|GO:0044249_0.651|GO:0043226_0.647|GO:0043229_0.643|GO:0005488_0.632|GO:0010467_0.626|GO:0009889_0.616|GO:0031326_0.616|GO:0010468_0.615|GO:0010556_0.615|GO:0080090_0.581|GO:0050896_0.566|GO:0048518_0.531|GO:0003824_0.530|GO:0006139_0.529|GO:0043227_0.525|GO:0043231_0.524|GO:0034654_0.523|GO:0090304_0.520|GO:0141187_0.520|GO:0005515_0.514|GO:0019538_0.512|GO:0140096_0.508|GO:0016740_0.506|GO:0005634_0.504|GO:0048519_0.502
|
IPR004181+465-546_477-524+|IPR013083+433-561+|IPR023321+260-432_279-430+|IPR036361+19-82_20-68+|IPR038654+278-431+
|
— |
PF02891+477-524+MIZ/SP-RING_zinc_finger|PF14324+279-430+PINIT_domain
|
— |
PTHR10782+18-727+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;64-278;352-412;556-854
|
3.000
|
27-63;279-351;413-555
|
4mvt_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
91988.420
|
8.174
|
19.000
|
21.194
|
8.782
|
49.180
|
50.820
|
12.646
|
8.548
|
57.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
2886.990
|
7633.388
|
2945.302
|
3158.560
|
3282.451
|
2722.690
|
3102.043
|
2379.666
|
2102.955
|
1594.327
|
1812.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.603
|
-1.410
|
0.209
|
— |
-0.255
|
0.198
|
— |
0.523
|
— | — | — | — | — |
No JSON data available for plots.