Hg_chrom7_TN10mRNA_14728
Organism: Heterodera glycines Gene Locus: chr7:8218351-8219717 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.465 | 0.727 | 1.379 | 0.25 | 0.897 | 0.774 | 0.75 | 1.0 | 1.216 | 0.909 | 4.118 | 0.833 | 1.538 | 1.429 | 0.929 | 0.656 | 1.061 | 1.154 | 1.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13897
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
9-31
|
0.998
|
— | — |
0.000
|
— | — |
0.068
|
0.959
|
0.015
|
0.124
|
0.046
|
0.025
|
0.032
|
0.016
|
0.047
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
A8XFG2.1 Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Caenorhabditis briggsae]
|
KAH7695131.1 CRE-NDUF-7 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008137|GO:0048038|GO:0051536|GO:0051539
|
GO:0005575_0.874|GO:0110165_0.841|GO:0016020_0.762|GO:0005622_0.684|GO:0005737_0.669|GO:0043226_0.657|GO:0043227_0.645|GO:0043229_0.643|GO:0043231_0.634
|
IPR006137+75-184+|IPR006138+36-189_52-190_156-172+
|
— |
PF01058+75-184+NADH_ubiquinone_oxidoreductase,_20_Kd_subunit
|
G3DSA:3.40.50.12280:FF:000001+42-200+NADH-quinone_oxidoreductase_subunit_B_2
|
PTHR11995+43-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
8esz_S7
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
22530.800
|
9.970
|
16.500
|
20.000
|
11.500
|
36.000
|
64.000
|
14.500
|
5.500
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
976.447
|
1149.511
|
933.813
|
987.675
|
1404.098
|
1409.780
|
839.278
|
1140.907
|
335.597
|
1070.858
|
755.746
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.529
|
-0.356
|
0.190
|
0.476
|
— |
-0.738
|
-0.410
|
-0.300
|
— |
1.736
|
— | — | — |
No JSON data available for plots.